Hb_003754_010

Information

Type -
Description -
Location Contig3754: 21809-29703
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09950g
description POPTRDRAFT_836093; hypothetical protein
nr
ID XP_006371410.1
description hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
swissprot
ID Q93ZR6
description O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1
trembl
ID U5FIG3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09950g PE=4 SV=1
Gene Ontology
ID GO:0016746
description o-acyltransferase wsd1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38334: 21793-29724 , PASA_asmbl_38335: 22482-29687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003754_010 0.0 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
2 Hb_004957_010 0.0200469078 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
3 Hb_153544_020 0.0370957188 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
4 Hb_001308_010 0.0475513674 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000997_220 0.0483830282 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
6 Hb_010833_010 0.0594755085 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
7 Hb_006651_020 0.0622686729 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
8 Hb_150179_010 0.0719605556 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
9 Hb_029584_030 0.0812154044 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
10 Hb_001557_030 0.082922926 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
11 Hb_004225_010 0.0839685218 - - -
12 Hb_010327_060 0.0850711756 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
13 Hb_004030_040 0.0856702361 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
14 Hb_005653_050 0.0870384756 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
15 Hb_006249_010 0.088922167 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
16 Hb_014834_100 0.090195177 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
17 Hb_001856_250 0.0911035578 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
18 Hb_000318_500 0.0911082203 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003765_010 0.091933857 - - berberine bridge enzyme [Hevea brasiliensis]
20 Hb_002757_030 0.0919562455 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_003754_010 Hb_003754_010 Hb_004957_010 Hb_004957_010 Hb_003754_010--Hb_004957_010 Hb_153544_020 Hb_153544_020 Hb_003754_010--Hb_153544_020 Hb_001308_010 Hb_001308_010 Hb_003754_010--Hb_001308_010 Hb_000997_220 Hb_000997_220 Hb_003754_010--Hb_000997_220 Hb_010833_010 Hb_010833_010 Hb_003754_010--Hb_010833_010 Hb_006651_020 Hb_006651_020 Hb_003754_010--Hb_006651_020 Hb_004957_010--Hb_001308_010 Hb_004957_010--Hb_153544_020 Hb_004957_010--Hb_000997_220 Hb_004957_010--Hb_006651_020 Hb_004957_010--Hb_010833_010 Hb_153544_020--Hb_010833_010 Hb_153544_020--Hb_006651_020 Hb_010327_060 Hb_010327_060 Hb_153544_020--Hb_010327_060 Hb_153544_020--Hb_000997_220 Hb_004225_010 Hb_004225_010 Hb_001308_010--Hb_004225_010 Hb_005653_050 Hb_005653_050 Hb_001308_010--Hb_005653_050 Hb_001308_010--Hb_000997_220 Hb_001373_170 Hb_001373_170 Hb_001308_010--Hb_001373_170 Hb_000483_340 Hb_000483_340 Hb_000997_220--Hb_000483_340 Hb_001856_250 Hb_001856_250 Hb_000997_220--Hb_001856_250 Hb_010833_010--Hb_006651_020 Hb_010833_010--Hb_000997_220 Hb_010833_010--Hb_010327_060 Hb_004030_040 Hb_004030_040 Hb_006651_020--Hb_004030_040 Hb_002757_030 Hb_002757_030 Hb_006651_020--Hb_002757_030 Hb_006651_020--Hb_001856_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.36135 18.3202 0 0.0120648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.26767

CAGE analysis