Hb_003760_040

Information

Type -
Description -
Location Contig3760: 73800-80090
Sequence    

Annotation

kegg
ID rcu:RCOM_1003480
description organic anion transporter, putative
nr
ID XP_002519318.1
description organic anion transporter, putative [Ricinus communis]
swissprot
ID Q9LRP2
description Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=1 SV=1
trembl
ID B9RZZ9
description Organic anion transporter, putative OS=Ricinus communis GN=RCOM_1003480 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sugar phosphate phosphate translocator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38369: 75107-75512 , PASA_asmbl_38370: 79685-80322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003760_040 0.0 - - organic anion transporter, putative [Ricinus communis]
2 Hb_161929_010 0.2607924311 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
3 Hb_005483_010 0.2709559961 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
4 Hb_021616_010 0.2711247356 - - -
5 Hb_002513_030 0.287013545 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
6 Hb_010142_080 0.2870378695 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
7 Hb_003446_040 0.2933756296 - - -
8 Hb_025311_020 0.300060811 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
9 Hb_000964_060 0.3010167819 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
10 Hb_005532_010 0.3015248776 - - -
11 Hb_004724_230 0.3087715868 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
12 Hb_002073_120 0.3106942125 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
13 Hb_009615_080 0.3110266946 - - hypothetical protein JCGZ_24461 [Jatropha curcas]
14 Hb_177179_010 0.3113546482 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
15 Hb_000440_030 0.3127800796 - - 50 kDa protein [Hevea brasiliensis]
16 Hb_003226_290 0.3134998579 - - catalytic, putative [Ricinus communis]
17 Hb_000638_040 0.3155757274 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
18 Hb_003025_070 0.3158292998 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
19 Hb_000226_100 0.3162838051 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
20 Hb_000009_070 0.3167713861 - - PREDICTED: globulin-1 S allele [Jatropha curcas]

Gene co-expression network

sample Hb_003760_040 Hb_003760_040 Hb_161929_010 Hb_161929_010 Hb_003760_040--Hb_161929_010 Hb_005483_010 Hb_005483_010 Hb_003760_040--Hb_005483_010 Hb_021616_010 Hb_021616_010 Hb_003760_040--Hb_021616_010 Hb_002513_030 Hb_002513_030 Hb_003760_040--Hb_002513_030 Hb_010142_080 Hb_010142_080 Hb_003760_040--Hb_010142_080 Hb_003446_040 Hb_003446_040 Hb_003760_040--Hb_003446_040 Hb_008370_010 Hb_008370_010 Hb_161929_010--Hb_008370_010 Hb_001477_140 Hb_001477_140 Hb_161929_010--Hb_001477_140 Hb_005532_010 Hb_005532_010 Hb_161929_010--Hb_005532_010 Hb_161929_010--Hb_005483_010 Hb_161929_010--Hb_021616_010 Hb_012286_070 Hb_012286_070 Hb_005483_010--Hb_012286_070 Hb_000450_140 Hb_000450_140 Hb_005483_010--Hb_000450_140 Hb_020818_010 Hb_020818_010 Hb_005483_010--Hb_020818_010 Hb_070247_010 Hb_070247_010 Hb_005483_010--Hb_070247_010 Hb_010760_010 Hb_010760_010 Hb_005483_010--Hb_010760_010 Hb_001545_250 Hb_001545_250 Hb_005483_010--Hb_001545_250 Hb_021616_010--Hb_005483_010 Hb_021616_010--Hb_010142_080 Hb_021616_010--Hb_005532_010 Hb_174876_010 Hb_174876_010 Hb_021616_010--Hb_174876_010 Hb_013429_020 Hb_013429_020 Hb_021616_010--Hb_013429_020 Hb_021616_010--Hb_008370_010 Hb_004724_230 Hb_004724_230 Hb_002513_030--Hb_004724_230 Hb_177179_010 Hb_177179_010 Hb_002513_030--Hb_177179_010 Hb_054127_050 Hb_054127_050 Hb_002513_030--Hb_054127_050 Hb_001523_020 Hb_001523_020 Hb_002513_030--Hb_001523_020 Hb_004553_020 Hb_004553_020 Hb_002513_030--Hb_004553_020 Hb_001780_120 Hb_001780_120 Hb_002513_030--Hb_001780_120 Hb_010142_080--Hb_005532_010 Hb_009421_010 Hb_009421_010 Hb_010142_080--Hb_009421_010 Hb_003226_290 Hb_003226_290 Hb_010142_080--Hb_003226_290 Hb_004413_030 Hb_004413_030 Hb_010142_080--Hb_004413_030 Hb_010142_080--Hb_013429_020 Hb_003446_040--Hb_004413_030 Hb_001277_310 Hb_001277_310 Hb_003446_040--Hb_001277_310 Hb_003446_040--Hb_005532_010 Hb_135624_010 Hb_135624_010 Hb_003446_040--Hb_135624_010 Hb_001009_130 Hb_001009_130 Hb_003446_040--Hb_001009_130 Hb_123521_010 Hb_123521_010 Hb_003446_040--Hb_123521_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200569 0.695242 0.125095 0.75823 0.0187957 1.11181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0917532 0 10.1464 1.9554 0.222676

CAGE analysis