Hb_003761_010

Information

Type -
Description -
Location Contig3761: 31977-46855
Sequence    

Annotation

kegg
ID rcu:RCOM_1315050
description alcohol dehydrogenase, putative (EC:1.1.1.255)
nr
ID XP_002518961.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9CAI3
description Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1
trembl
ID B9RYZ2
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_1315050 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable cinnamyl alcohol dehydrogenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38371: 32052-46852 , PASA_asmbl_38372: 32014-46852 , PASA_asmbl_38373: 37241-37579 , PASA_asmbl_38374: 35697-35900 , PASA_asmbl_38375: 33088-33481 , PASA_asmbl_38376: 33761-34178 , PASA_asmbl_38377: 35120-35448
cDNA
(Sanger)
(ID:Location)		 013_B11.ab1: 32099-39680 , 046_L21.ab1: 32099-39791 , 046_P22.ab1: 32099-45697

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003761_010 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_001205_240 0.0523319676 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
3 Hb_000185_030 0.0555983632 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
4 Hb_028285_010 0.0665536712 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
5 Hb_002205_110 0.0667102035 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000028_370 0.0673552718 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
7 Hb_002232_410 0.0684494502 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
8 Hb_008725_230 0.0685826824 - - PREDICTED: CTP synthase [Jatropha curcas]
9 Hb_000023_280 0.069012621 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
10 Hb_002078_130 0.0699232818 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
11 Hb_000015_040 0.0743365157 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
12 Hb_000710_060 0.0749525697 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
13 Hb_000732_010 0.0753084827 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
14 Hb_000395_190 0.0759292702 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
15 Hb_000030_030 0.0769812459 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
16 Hb_011485_070 0.0770576229 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
17 Hb_002685_110 0.077305406 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
18 Hb_000189_560 0.0773458913 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
19 Hb_002078_350 0.0776847355 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
20 Hb_014497_050 0.0778325584 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]

Gene co-expression network

sample Hb_003761_010 Hb_003761_010 Hb_001205_240 Hb_001205_240 Hb_003761_010--Hb_001205_240 Hb_000185_030 Hb_000185_030 Hb_003761_010--Hb_000185_030 Hb_028285_010 Hb_028285_010 Hb_003761_010--Hb_028285_010 Hb_002205_110 Hb_002205_110 Hb_003761_010--Hb_002205_110 Hb_000028_370 Hb_000028_370 Hb_003761_010--Hb_000028_370 Hb_002232_410 Hb_002232_410 Hb_003761_010--Hb_002232_410 Hb_001205_240--Hb_000028_370 Hb_008725_230 Hb_008725_230 Hb_001205_240--Hb_008725_230 Hb_001205_240--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_001205_240--Hb_000732_010 Hb_000710_060 Hb_000710_060 Hb_001205_240--Hb_000710_060 Hb_000297_010 Hb_000297_010 Hb_000185_030--Hb_000297_010 Hb_000185_030--Hb_000710_060 Hb_001633_210 Hb_001633_210 Hb_000185_030--Hb_001633_210 Hb_000185_030--Hb_008725_230 Hb_000840_250 Hb_000840_250 Hb_000185_030--Hb_000840_250 Hb_000062_070 Hb_000062_070 Hb_028285_010--Hb_000062_070 Hb_005048_130 Hb_005048_130 Hb_028285_010--Hb_005048_130 Hb_000907_110 Hb_000907_110 Hb_028285_010--Hb_000907_110 Hb_001408_040 Hb_001408_040 Hb_028285_010--Hb_001408_040 Hb_014497_050 Hb_014497_050 Hb_028285_010--Hb_014497_050 Hb_002205_110--Hb_000028_370 Hb_002205_110--Hb_002232_410 Hb_002205_110--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_002205_110--Hb_010997_080 Hb_000441_140 Hb_000441_140 Hb_002205_110--Hb_000441_140 Hb_000028_370--Hb_008725_230 Hb_000028_370--Hb_002232_410 Hb_168978_010 Hb_168978_010 Hb_000028_370--Hb_168978_010 Hb_002232_410--Hb_008725_230 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002232_410--Hb_000732_010 Hb_005271_220 Hb_005271_220 Hb_002232_410--Hb_005271_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.3799 75.4508 36.459 68.5308 51.2909 72.1942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.7359 75.9864 73.8321 68.0084 37.3011

CAGE analysis