Hb_003766_040

Information

Type -
Description -
Location Contig3766: 56498-59387
Sequence    

Annotation

kegg
ID rcu:RCOM_1609310
description pentatricopeptide repeat-containing protein, putative (EC:2.3.1.74)
nr
ID XP_002511627.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O81908
description Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2 SV=2
trembl
ID B9RD38
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1609310 PE=3 SV=1
Gene Ontology
ID GO:0003677
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38380: 56036-56618 , PASA_asmbl_38382: 57563-57866 , PASA_asmbl_38383: 57896-58307 , PASA_asmbl_38384: 58752-59341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003766_040 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_003175_010 0.0557864693 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
3 Hb_000808_270 0.0592798338 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
4 Hb_000926_280 0.0621643217 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
5 Hb_001489_150 0.0651633478 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
6 Hb_007416_280 0.0667886916 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002026_180 0.0674061247 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
8 Hb_001677_210 0.0674717709 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
9 Hb_000030_300 0.0684494612 - - Thioredoxin, putative [Ricinus communis]
10 Hb_048937_040 0.070262673 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
11 Hb_009557_070 0.0712941029 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010457_030 0.0753514107 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
13 Hb_003615_010 0.0757163319 - - 60S ribosomal protein L8, putative [Ricinus communis]
14 Hb_000395_170 0.0761235395 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
15 Hb_000045_090 0.0781181511 - - PREDICTED: syntaxin-31 [Jatropha curcas]
16 Hb_061090_010 0.0781544608 - - RAN BINDING protein 1 [Populus trichocarpa]
17 Hb_019280_040 0.0789315427 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_039946_020 0.0805372114 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002811_360 0.0812530818 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
20 Hb_039837_010 0.0816010472 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]

Gene co-expression network

sample Hb_003766_040 Hb_003766_040 Hb_003175_010 Hb_003175_010 Hb_003766_040--Hb_003175_010 Hb_000808_270 Hb_000808_270 Hb_003766_040--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_003766_040--Hb_000926_280 Hb_001489_150 Hb_001489_150 Hb_003766_040--Hb_001489_150 Hb_007416_280 Hb_007416_280 Hb_003766_040--Hb_007416_280 Hb_002026_180 Hb_002026_180 Hb_003766_040--Hb_002026_180 Hb_003175_010--Hb_000808_270 Hb_003175_010--Hb_000926_280 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_048937_040 Hb_048937_040 Hb_003175_010--Hb_048937_040 Hb_006827_020 Hb_006827_020 Hb_000808_270--Hb_006827_020 Hb_001677_210 Hb_001677_210 Hb_000808_270--Hb_001677_210 Hb_007317_110 Hb_007317_110 Hb_000808_270--Hb_007317_110 Hb_143629_210 Hb_143629_210 Hb_000808_270--Hb_143629_210 Hb_000629_010 Hb_000629_010 Hb_000808_270--Hb_000629_010 Hb_000926_280--Hb_000030_300 Hb_007951_060 Hb_007951_060 Hb_000926_280--Hb_007951_060 Hb_011689_080 Hb_011689_080 Hb_000926_280--Hb_011689_080 Hb_002391_300 Hb_002391_300 Hb_000926_280--Hb_002391_300 Hb_000327_120 Hb_000327_120 Hb_000926_280--Hb_000327_120 Hb_005291_030 Hb_005291_030 Hb_001489_150--Hb_005291_030 Hb_003952_070 Hb_003952_070 Hb_001489_150--Hb_003952_070 Hb_004032_150 Hb_004032_150 Hb_001489_150--Hb_004032_150 Hb_001489_150--Hb_000808_270 Hb_001489_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_001489_150--Hb_001638_170 Hb_003092_040 Hb_003092_040 Hb_007416_280--Hb_003092_040 Hb_007416_280--Hb_004032_150 Hb_007416_280--Hb_002026_180 Hb_007416_280--Hb_019280_040 Hb_000618_040 Hb_000618_040 Hb_007416_280--Hb_000618_040 Hb_002026_180--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_002026_180--Hb_002016_110 Hb_000571_120 Hb_000571_120 Hb_002026_180--Hb_000571_120 Hb_189003_080 Hb_189003_080 Hb_002026_180--Hb_189003_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.98396 2.09116 2.24727 1.91997 3.08458 6.3188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45449 3.88963 4.05919 2.64332 1.4341

CAGE analysis