Hb_003767_060

Information

Type -
Description -
Location Contig3767: 93835-96738
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14390g
description kinase family protein
nr
ID XP_012077782.1
description PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID A0A067KDS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13423 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003767_060 0.0 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
2 Hb_001369_340 0.0570309188 - - Peroxisomal membrane protein 11B [Theobroma cacao]
3 Hb_002010_030 0.0615418933 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
4 Hb_004017_030 0.0665174183 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
5 Hb_003209_150 0.0776260238 - - CLE9, putative [Ricinus communis]
6 Hb_007462_020 0.0783634189 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_002818_160 0.0802359642 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
8 Hb_006106_010 0.081521056 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
9 Hb_002307_120 0.0909080734 - - scab resistance family protein [Populus trichocarpa]
10 Hb_004109_140 0.0913149426 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005433_020 0.0962086533 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
12 Hb_000025_700 0.0990517202 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
13 Hb_004117_380 0.0996113063 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
14 Hb_000031_320 0.0999967063 - - unnamed protein product [Vitis vinifera]
15 Hb_001777_030 0.1011934433 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
16 Hb_000483_470 0.1013590643 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_046739_010 0.1019679951 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
18 Hb_003373_050 0.1043833091 - - receptor protein kinase zmpk1, putative [Ricinus communis]
19 Hb_060534_010 0.1074055044 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
20 Hb_005227_030 0.1092800855 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003767_060 Hb_003767_060 Hb_001369_340 Hb_001369_340 Hb_003767_060--Hb_001369_340 Hb_002010_030 Hb_002010_030 Hb_003767_060--Hb_002010_030 Hb_004017_030 Hb_004017_030 Hb_003767_060--Hb_004017_030 Hb_003209_150 Hb_003209_150 Hb_003767_060--Hb_003209_150 Hb_007462_020 Hb_007462_020 Hb_003767_060--Hb_007462_020 Hb_002818_160 Hb_002818_160 Hb_003767_060--Hb_002818_160 Hb_000025_700 Hb_000025_700 Hb_001369_340--Hb_000025_700 Hb_004117_380 Hb_004117_380 Hb_001369_340--Hb_004117_380 Hb_001369_340--Hb_004017_030 Hb_001369_340--Hb_003209_150 Hb_001369_340--Hb_007462_020 Hb_002010_030--Hb_004017_030 Hb_002010_030--Hb_001369_340 Hb_004109_140 Hb_004109_140 Hb_002010_030--Hb_004109_140 Hb_046739_010 Hb_046739_010 Hb_002010_030--Hb_046739_010 Hb_005433_020 Hb_005433_020 Hb_002010_030--Hb_005433_020 Hb_004017_030--Hb_007462_020 Hb_000155_020 Hb_000155_020 Hb_004017_030--Hb_000155_020 Hb_010136_010 Hb_010136_010 Hb_004017_030--Hb_010136_010 Hb_002284_160 Hb_002284_160 Hb_004017_030--Hb_002284_160 Hb_002307_120 Hb_002307_120 Hb_003209_150--Hb_002307_120 Hb_003209_150--Hb_004117_380 Hb_003654_020 Hb_003654_020 Hb_003209_150--Hb_003654_020 Hb_003209_150--Hb_004017_030 Hb_000460_040 Hb_000460_040 Hb_007462_020--Hb_000460_040 Hb_007462_020--Hb_000155_020 Hb_007462_020--Hb_000025_700 Hb_002818_160--Hb_002307_120 Hb_000031_320 Hb_000031_320 Hb_002818_160--Hb_000031_320 Hb_000186_180 Hb_000186_180 Hb_002818_160--Hb_000186_180 Hb_002818_160--Hb_003209_150 Hb_002818_160--Hb_003654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.43858 9.89857 2.77709 0.0114352 0.0347744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.055589 0 0 0.0958905 10.886

CAGE analysis