Hb_003768_030

Information

Type -
Description -
Location Contig3768: 35316-41003
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12880g
description POPTRDRAFT_778605; hypothetical protein
nr
ID XP_012074923.1
description PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
swissprot
ID A8IR43
description Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2
trembl
ID A0A067KUV1
description Ribosome biogenesis protein WDR12 homolog OS=Jatropha curcas GN=JCGZ_09062 PE=3 SV=1
Gene Ontology
ID GO:0005654
description ribosome biogenesis protein wdr12 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38388: 35714-41005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003768_030 0.0 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
2 Hb_000053_020 0.06578208 - - F-box and wd40 domain protein, putative [Ricinus communis]
3 Hb_001195_200 0.0661529945 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
4 Hb_004324_270 0.0752720473 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
5 Hb_008453_030 0.0772599291 - - Thioredoxin superfamily protein [Theobroma cacao]
6 Hb_001489_080 0.0774374047 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_012423_030 0.0809287237 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000982_080 0.0811804001 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
9 Hb_011457_050 0.0824313866 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
10 Hb_001489_090 0.0825214394 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
11 Hb_002183_060 0.0855529737 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
12 Hb_006420_080 0.0872591275 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_011360_070 0.0885914114 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
14 Hb_001514_120 0.0893410344 - - hypothetical protein VITISV_015004 [Vitis vinifera]
15 Hb_005446_010 0.0908350775 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
16 Hb_000327_060 0.0915683124 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
17 Hb_001366_180 0.0920040636 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
18 Hb_000289_110 0.0926949178 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
19 Hb_000985_030 0.0936255072 - - PREDICTED: RRP15-like protein [Populus euphratica]
20 Hb_002799_070 0.0940634038 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]

Gene co-expression network

sample Hb_003768_030 Hb_003768_030 Hb_000053_020 Hb_000053_020 Hb_003768_030--Hb_000053_020 Hb_001195_200 Hb_001195_200 Hb_003768_030--Hb_001195_200 Hb_004324_270 Hb_004324_270 Hb_003768_030--Hb_004324_270 Hb_008453_030 Hb_008453_030 Hb_003768_030--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_003768_030--Hb_001489_080 Hb_012423_030 Hb_012423_030 Hb_003768_030--Hb_012423_030 Hb_000053_020--Hb_008453_030 Hb_001386_040 Hb_001386_040 Hb_000053_020--Hb_001386_040 Hb_006274_030 Hb_006274_030 Hb_000053_020--Hb_006274_030 Hb_001189_070 Hb_001189_070 Hb_000053_020--Hb_001189_070 Hb_001489_090 Hb_001489_090 Hb_000053_020--Hb_001489_090 Hb_000982_080 Hb_000982_080 Hb_001195_200--Hb_000982_080 Hb_001195_200--Hb_001489_090 Hb_000327_180 Hb_000327_180 Hb_001195_200--Hb_000327_180 Hb_003376_250 Hb_003376_250 Hb_001195_200--Hb_003376_250 Hb_000258_260 Hb_000258_260 Hb_001195_200--Hb_000258_260 Hb_011457_050 Hb_011457_050 Hb_004324_270--Hb_011457_050 Hb_000046_050 Hb_000046_050 Hb_004324_270--Hb_000046_050 Hb_005446_010 Hb_005446_010 Hb_004324_270--Hb_005446_010 Hb_002408_020 Hb_002408_020 Hb_004324_270--Hb_002408_020 Hb_002183_060 Hb_002183_060 Hb_004324_270--Hb_002183_060 Hb_004934_100 Hb_004934_100 Hb_008453_030--Hb_004934_100 Hb_000421_220 Hb_000421_220 Hb_008453_030--Hb_000421_220 Hb_000107_160 Hb_000107_160 Hb_008453_030--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_008453_030--Hb_000061_210 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_000081_160 Hb_000081_160 Hb_008453_030--Hb_000081_160 Hb_000985_030 Hb_000985_030 Hb_001489_080--Hb_000985_030 Hb_001489_080--Hb_004934_100 Hb_000783_020 Hb_000783_020 Hb_001489_080--Hb_000783_020 Hb_000599_250 Hb_000599_250 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_002169_040 Hb_002169_040 Hb_001489_080--Hb_002169_040 Hb_012423_030--Hb_000107_160 Hb_012423_030--Hb_008453_030 Hb_000327_060 Hb_000327_060 Hb_012423_030--Hb_000327_060 Hb_012423_030--Hb_004324_270 Hb_029879_130 Hb_029879_130 Hb_012423_030--Hb_029879_130 Hb_012675_050 Hb_012675_050 Hb_012423_030--Hb_012675_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.78737 6.23223 7.14167 9.42623 6.68745 6.98928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0575 19.7659 14.0285 11.7929 15.9117

CAGE analysis