Hb_003768_040

Information

Type -
Description -
Location Contig3768: 43355-45928
Sequence    

Annotation

kegg
ID rcu:RCOM_0526770
description ubiquitin-protein ligase, putative
nr
ID XP_002526119.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID B9SJF0
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0526770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003768_040 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_000099_220 0.1547759712 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_098315_110 0.1699330297 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002311_250 0.1729708733 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
5 Hb_001946_360 0.1736363437 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
6 Hb_130177_010 0.1793452633 - - hypothetical protein RCOM_0897890 [Ricinus communis]
7 Hb_000431_020 0.1884274822 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
8 Hb_006029_020 0.1928963486 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1, partial [Vitis vinifera]
9 Hb_000832_200 0.1955521831 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
10 Hb_010931_110 0.1972520719 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_000406_040 0.1980401412 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
12 Hb_004650_080 0.2010236714 - - -
13 Hb_000857_050 0.2026953848 - - PREDICTED: protein YLS9 [Jatropha curcas]
14 Hb_009680_030 0.2028696618 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
15 Hb_011344_010 0.2056665412 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
16 Hb_000300_530 0.2066835784 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
17 Hb_002239_040 0.2068670668 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
18 Hb_000176_170 0.2081100217 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
19 Hb_004097_020 0.2104331031 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003327_030 0.2112476793 - - Hsc70-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003768_040 Hb_003768_040 Hb_000099_220 Hb_000099_220 Hb_003768_040--Hb_000099_220 Hb_098315_110 Hb_098315_110 Hb_003768_040--Hb_098315_110 Hb_002311_250 Hb_002311_250 Hb_003768_040--Hb_002311_250 Hb_001946_360 Hb_001946_360 Hb_003768_040--Hb_001946_360 Hb_130177_010 Hb_130177_010 Hb_003768_040--Hb_130177_010 Hb_000431_020 Hb_000431_020 Hb_003768_040--Hb_000431_020 Hb_000857_050 Hb_000857_050 Hb_000099_220--Hb_000857_050 Hb_000590_030 Hb_000590_030 Hb_000099_220--Hb_000590_030 Hb_064885_020 Hb_064885_020 Hb_000099_220--Hb_064885_020 Hb_002450_110 Hb_002450_110 Hb_000099_220--Hb_002450_110 Hb_104812_030 Hb_104812_030 Hb_000099_220--Hb_104812_030 Hb_000300_530 Hb_000300_530 Hb_098315_110--Hb_000300_530 Hb_001268_230 Hb_001268_230 Hb_098315_110--Hb_001268_230 Hb_004648_040 Hb_004648_040 Hb_098315_110--Hb_004648_040 Hb_000317_080 Hb_000317_080 Hb_098315_110--Hb_000317_080 Hb_098315_110--Hb_130177_010 Hb_006029_010 Hb_006029_010 Hb_098315_110--Hb_006029_010 Hb_011457_160 Hb_011457_160 Hb_002311_250--Hb_011457_160 Hb_002311_250--Hb_001946_360 Hb_011344_010 Hb_011344_010 Hb_002311_250--Hb_011344_010 Hb_002374_440 Hb_002374_440 Hb_002311_250--Hb_002374_440 Hb_002239_040 Hb_002239_040 Hb_002311_250--Hb_002239_040 Hb_009680_030 Hb_009680_030 Hb_002311_250--Hb_009680_030 Hb_005228_120 Hb_005228_120 Hb_001946_360--Hb_005228_120 Hb_001946_360--Hb_000317_080 Hb_000395_140 Hb_000395_140 Hb_001946_360--Hb_000395_140 Hb_001946_360--Hb_130177_010 Hb_001341_040 Hb_001341_040 Hb_001946_360--Hb_001341_040 Hb_010931_110 Hb_010931_110 Hb_130177_010--Hb_010931_110 Hb_130177_010--Hb_006029_010 Hb_000300_540 Hb_000300_540 Hb_130177_010--Hb_000300_540 Hb_010368_070 Hb_010368_070 Hb_130177_010--Hb_010368_070 Hb_000987_050 Hb_000987_050 Hb_130177_010--Hb_000987_050 Hb_000176_170 Hb_000176_170 Hb_000431_020--Hb_000176_170 Hb_000832_200 Hb_000832_200 Hb_000431_020--Hb_000832_200 Hb_000038_030 Hb_000038_030 Hb_000431_020--Hb_000038_030 Hb_099864_010 Hb_099864_010 Hb_000431_020--Hb_099864_010 Hb_000406_040 Hb_000406_040 Hb_000431_020--Hb_000406_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.69835 1.90064 0.615945 1.20767 18.7763 3.04503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65342 1.19213 7.68482 2.17516 0.148609

CAGE analysis