Hb_003768_100

Information

Type -
Description -
Location Contig3768: 74342-74689
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12850g
description POPTRDRAFT_577741; hypothetical protein
nr
ID KDP27231.1
description hypothetical protein JCGZ_19930 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19930 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor upbeat1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38395: 74509-75281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003768_100 0.0 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
2 Hb_008418_010 0.09194352 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
3 Hb_000723_240 0.0980114589 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
4 Hb_003160_050 0.0997866225 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_007313_010 0.1058169016 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
6 Hb_003226_050 0.1085713657 - - Pectinesterase-3 precursor, putative [Ricinus communis]
7 Hb_007017_120 0.1129104901 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
8 Hb_098030_010 0.1185173245 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
9 Hb_000979_080 0.1190744818 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
10 Hb_000139_500 0.120925 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
11 Hb_000318_060 0.1223227513 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002809_020 0.1242568297 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
13 Hb_000834_210 0.1289587076 - - unnamed protein product [Vitis vinifera]
14 Hb_000347_230 0.131521023 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
15 Hb_018591_010 0.1340157048 - - kinase, putative [Ricinus communis]
16 Hb_006618_080 0.134203276 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
17 Hb_006637_040 0.1344646195 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
18 Hb_164283_010 0.1365997625 - - hypothetical protein RCOM_0725500 [Ricinus communis]
19 Hb_118707_020 0.1404098633 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008727_030 0.1429749227 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003768_100 Hb_003768_100 Hb_008418_010 Hb_008418_010 Hb_003768_100--Hb_008418_010 Hb_000723_240 Hb_000723_240 Hb_003768_100--Hb_000723_240 Hb_003160_050 Hb_003160_050 Hb_003768_100--Hb_003160_050 Hb_007313_010 Hb_007313_010 Hb_003768_100--Hb_007313_010 Hb_003226_050 Hb_003226_050 Hb_003768_100--Hb_003226_050 Hb_007017_120 Hb_007017_120 Hb_003768_100--Hb_007017_120 Hb_164283_010 Hb_164283_010 Hb_008418_010--Hb_164283_010 Hb_018591_010 Hb_018591_010 Hb_008418_010--Hb_018591_010 Hb_006637_040 Hb_006637_040 Hb_008418_010--Hb_006637_040 Hb_008418_010--Hb_000723_240 Hb_001922_010 Hb_001922_010 Hb_008418_010--Hb_001922_010 Hb_000723_240--Hb_003160_050 Hb_000834_210 Hb_000834_210 Hb_000723_240--Hb_000834_210 Hb_000723_240--Hb_007313_010 Hb_000723_240--Hb_001922_010 Hb_000589_100 Hb_000589_100 Hb_000723_240--Hb_000589_100 Hb_003160_050--Hb_000834_210 Hb_003160_050--Hb_007313_010 Hb_000139_500 Hb_000139_500 Hb_003160_050--Hb_000139_500 Hb_002003_010 Hb_002003_010 Hb_003160_050--Hb_002003_010 Hb_007313_010--Hb_000834_210 Hb_001514_070 Hb_001514_070 Hb_007313_010--Hb_001514_070 Hb_003734_120 Hb_003734_120 Hb_007313_010--Hb_003734_120 Hb_000364_130 Hb_000364_130 Hb_003226_050--Hb_000364_130 Hb_000544_130 Hb_000544_130 Hb_003226_050--Hb_000544_130 Hb_000979_080 Hb_000979_080 Hb_003226_050--Hb_000979_080 Hb_000187_110 Hb_000187_110 Hb_003226_050--Hb_000187_110 Hb_000161_230 Hb_000161_230 Hb_003226_050--Hb_000161_230 Hb_007017_120--Hb_008418_010 Hb_002809_020 Hb_002809_020 Hb_007017_120--Hb_002809_020 Hb_178252_010 Hb_178252_010 Hb_007017_120--Hb_178252_010 Hb_007017_120--Hb_000723_240 Hb_003166_020 Hb_003166_020 Hb_007017_120--Hb_003166_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.75939 9.70549 20.5293 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 41.0388 3.11738

CAGE analysis