Hb_003768_110

Information

Type -
Description -
Location Contig3768: 77644-80374
Sequence    

Annotation

kegg
ID pop:POPTR_0004s12230g
description POPTRDRAFT_800707; hypothetical protein
nr
ID XP_002306038.2
description hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
swissprot
ID Q9SGA8
description UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana GN=UGT83A1 PE=2 SV=1
trembl
ID B9H0D2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s12230g PE=4 SV=2
Gene Ontology
ID GO:0016757
description udp-glycosyltransferase 83a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38397: 78432-78662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003768_110 0.0 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
2 Hb_000993_020 0.0633241338 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
3 Hb_002217_210 0.1283482913 - - -
4 Hb_001922_020 0.1308201299 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001002_090 0.1374811208 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
6 Hb_000979_080 0.1443447444 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
7 Hb_001416_170 0.1480679749 - - kinase, putative [Ricinus communis]
8 Hb_004452_080 0.1526278177 - - ring finger protein, putative [Ricinus communis]
9 Hb_000022_280 0.1537232899 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
10 Hb_006834_010 0.1565715936 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001623_400 0.1604484228 - - conserved hypothetical protein [Ricinus communis]
12 Hb_055440_010 0.1607796732 - - protein binding protein, putative [Ricinus communis]
13 Hb_055147_020 0.1657471796 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
14 Hb_002437_010 0.1660086616 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
15 Hb_000086_720 0.1661925648 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
16 Hb_000300_170 0.1673507368 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
17 Hb_003266_060 0.1699228385 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
18 Hb_004129_110 0.1704594837 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
19 Hb_000187_110 0.1722187711 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
20 Hb_010598_010 0.1722508179 - - PREDICTED: ankyrin-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003768_110 Hb_003768_110 Hb_000993_020 Hb_000993_020 Hb_003768_110--Hb_000993_020 Hb_002217_210 Hb_002217_210 Hb_003768_110--Hb_002217_210 Hb_001922_020 Hb_001922_020 Hb_003768_110--Hb_001922_020 Hb_001002_090 Hb_001002_090 Hb_003768_110--Hb_001002_090 Hb_000979_080 Hb_000979_080 Hb_003768_110--Hb_000979_080 Hb_001416_170 Hb_001416_170 Hb_003768_110--Hb_001416_170 Hb_014865_010 Hb_014865_010 Hb_000993_020--Hb_014865_010 Hb_001623_400 Hb_001623_400 Hb_000993_020--Hb_001623_400 Hb_002437_010 Hb_002437_010 Hb_000993_020--Hb_002437_010 Hb_000993_020--Hb_000979_080 Hb_000417_350 Hb_000417_350 Hb_000993_020--Hb_000417_350 Hb_004635_040 Hb_004635_040 Hb_002217_210--Hb_004635_040 Hb_005144_100 Hb_005144_100 Hb_002217_210--Hb_005144_100 Hb_002044_110 Hb_002044_110 Hb_002217_210--Hb_002044_110 Hb_002217_210--Hb_001922_020 Hb_010614_020 Hb_010614_020 Hb_002217_210--Hb_010614_020 Hb_008959_050 Hb_008959_050 Hb_002217_210--Hb_008959_050 Hb_004452_080 Hb_004452_080 Hb_001922_020--Hb_004452_080 Hb_001922_020--Hb_002044_110 Hb_003413_020 Hb_003413_020 Hb_001922_020--Hb_003413_020 Hb_002236_070 Hb_002236_070 Hb_001922_020--Hb_002236_070 Hb_055440_010 Hb_055440_010 Hb_001002_090--Hb_055440_010 Hb_001002_090--Hb_000979_080 Hb_000187_110 Hb_000187_110 Hb_001002_090--Hb_000187_110 Hb_072997_010 Hb_072997_010 Hb_001002_090--Hb_072997_010 Hb_009767_030 Hb_009767_030 Hb_001002_090--Hb_009767_030 Hb_001776_070 Hb_001776_070 Hb_001002_090--Hb_001776_070 Hb_000979_080--Hb_000187_110 Hb_003768_100 Hb_003768_100 Hb_000979_080--Hb_003768_100 Hb_003226_050 Hb_003226_050 Hb_000979_080--Hb_003226_050 Hb_000979_080--Hb_055440_010 Hb_001053_110 Hb_001053_110 Hb_000979_080--Hb_001053_110 Hb_000853_010 Hb_000853_010 Hb_001416_170--Hb_000853_010 Hb_006834_010 Hb_006834_010 Hb_001416_170--Hb_006834_010 Hb_055147_020 Hb_055147_020 Hb_001416_170--Hb_055147_020 Hb_000975_130 Hb_000975_130 Hb_001416_170--Hb_000975_130 Hb_004984_020 Hb_004984_020 Hb_001416_170--Hb_004984_020 Hb_001416_170--Hb_055440_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0533458 0.0736325 0.112074 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.162922 0

CAGE analysis