Hb_003772_020

Information

Type -
Description -
Location Contig3772: 3515-5384
Sequence    

Annotation

kegg
ID tcc:TCM_044286
description Retrotransposon protein, putative
nr
ID XP_010911131.1
description PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003772_020 0.0 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
2 Hb_000014_130 0.208548654 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
3 Hb_032018_010 0.2221976425 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
4 Hb_000062_500 0.2236238857 - - PREDICTED: urease-like [Zea mays]
5 Hb_007978_020 0.2379068564 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
6 Hb_041237_010 0.2503779185 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010447_020 0.2551398182 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
8 Hb_033926_010 0.2604554965 - - -
9 Hb_000317_090 0.2605659897 - - hypothetical protein RCOM_1176360 [Ricinus communis]
10 Hb_002837_090 0.2673323401 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
11 Hb_002737_020 0.2687501187 - - metallothionein [Bruguiera gymnorhiza]
12 Hb_097433_020 0.2691125097 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_018118_020 0.2698774268 - - unnamed protein product [Vitis vinifera]
14 Hb_005203_050 0.2852308453 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_164225_010 0.286553568 - - -
16 Hb_012107_070 0.2870892585 - - -
17 Hb_010997_100 0.290650583 transcription factor TF Family: mTERF -
18 Hb_040779_010 0.2928354601 - - -
19 Hb_011794_020 0.2934709734 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_034667_020 0.2940346954 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003772_020 Hb_003772_020 Hb_000014_130 Hb_000014_130 Hb_003772_020--Hb_000014_130 Hb_032018_010 Hb_032018_010 Hb_003772_020--Hb_032018_010 Hb_000062_500 Hb_000062_500 Hb_003772_020--Hb_000062_500 Hb_007978_020 Hb_007978_020 Hb_003772_020--Hb_007978_020 Hb_041237_010 Hb_041237_010 Hb_003772_020--Hb_041237_010 Hb_010447_020 Hb_010447_020 Hb_003772_020--Hb_010447_020 Hb_000014_130--Hb_041237_010 Hb_000014_130--Hb_007978_020 Hb_002904_090 Hb_002904_090 Hb_000014_130--Hb_002904_090 Hb_000014_130--Hb_032018_010 Hb_003398_010 Hb_003398_010 Hb_000014_130--Hb_003398_010 Hb_032018_010--Hb_000062_500 Hb_002837_090 Hb_002837_090 Hb_032018_010--Hb_002837_090 Hb_005203_050 Hb_005203_050 Hb_032018_010--Hb_005203_050 Hb_000317_090 Hb_000317_090 Hb_032018_010--Hb_000317_090 Hb_000062_500--Hb_005203_050 Hb_000062_500--Hb_007978_020 Hb_000062_500--Hb_000014_130 Hb_167316_010 Hb_167316_010 Hb_000062_500--Hb_167316_010 Hb_181975_010 Hb_181975_010 Hb_007978_020--Hb_181975_010 Hb_007978_020--Hb_041237_010 Hb_000574_150 Hb_000574_150 Hb_007978_020--Hb_000574_150 Hb_000617_040 Hb_000617_040 Hb_007978_020--Hb_000617_040 Hb_007978_020--Hb_003398_010 Hb_041237_010--Hb_003398_010 Hb_041237_010--Hb_000617_040 Hb_000413_170 Hb_000413_170 Hb_041237_010--Hb_000413_170 Hb_003299_080 Hb_003299_080 Hb_041237_010--Hb_003299_080 Hb_010565_020 Hb_010565_020 Hb_010447_020--Hb_010565_020 Hb_033926_010 Hb_033926_010 Hb_010447_020--Hb_033926_010 Hb_012107_070 Hb_012107_070 Hb_010447_020--Hb_012107_070 Hb_006230_040 Hb_006230_040 Hb_010447_020--Hb_006230_040 Hb_055339_010 Hb_055339_010 Hb_010447_020--Hb_055339_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.220303 0.289022 0.0815346 0 0.0965152 0.414105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis