Hb_003772_080

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3772: 48664-54181
Sequence    

Annotation

kegg
ID tcc:TCM_031055
description Leucine-rich repeat containing protein
nr
ID XP_012069214.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A061F749
description Leucine-rich repeat containing protein OS=Theobroma cacao GN=TCM_031055 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003772_080 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_171659_010 0.1513675868 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
3 Hb_000317_090 0.1647226151 - - hypothetical protein RCOM_1176360 [Ricinus communis]
4 Hb_001276_010 0.1736181975 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
5 Hb_000559_050 0.2452325965 - - hypothetical protein JCGZ_20429 [Jatropha curcas]
6 Hb_011909_090 0.2472317684 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105633212 [Jatropha curcas]
7 Hb_001589_070 0.252788975 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_022452_010 0.2547110517 - - -
9 Hb_003816_020 0.2678807704 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
10 Hb_003534_040 0.2692697685 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
11 Hb_007382_040 0.2709576462 - - uncharacterized LOC105644857 [Jatropha curcas]
12 Hb_002837_090 0.2723838232 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
13 Hb_002609_100 0.2723864255 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
14 Hb_101040_010 0.2725484955 - - -
15 Hb_002026_230 0.2767187514 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
16 Hb_007978_020 0.282182979 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
17 Hb_073212_010 0.2826525838 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
18 Hb_000176_060 0.2865509602 - - unnamed protein product [Vitis vinifera]
19 Hb_000836_050 0.2869780669 - - -
20 Hb_004534_020 0.2875638229 - - PREDICTED: cysteine proteinase inhibitor B [Jatropha curcas]

Gene co-expression network

sample Hb_003772_080 Hb_003772_080 Hb_171659_010 Hb_171659_010 Hb_003772_080--Hb_171659_010 Hb_000317_090 Hb_000317_090 Hb_003772_080--Hb_000317_090 Hb_001276_010 Hb_001276_010 Hb_003772_080--Hb_001276_010 Hb_000559_050 Hb_000559_050 Hb_003772_080--Hb_000559_050 Hb_011909_090 Hb_011909_090 Hb_003772_080--Hb_011909_090 Hb_001589_070 Hb_001589_070 Hb_003772_080--Hb_001589_070 Hb_022452_010 Hb_022452_010 Hb_171659_010--Hb_022452_010 Hb_171659_010--Hb_001276_010 Hb_171659_010--Hb_000317_090 Hb_003816_020 Hb_003816_020 Hb_171659_010--Hb_003816_020 Hb_004939_020 Hb_004939_020 Hb_171659_010--Hb_004939_020 Hb_002837_090 Hb_002837_090 Hb_000317_090--Hb_002837_090 Hb_000317_090--Hb_001276_010 Hb_000317_090--Hb_022452_010 Hb_000317_090--Hb_003816_020 Hb_001276_010--Hb_022452_010 Hb_000176_060 Hb_000176_060 Hb_001276_010--Hb_000176_060 Hb_003222_010 Hb_003222_010 Hb_001276_010--Hb_003222_010 Hb_027998_030 Hb_027998_030 Hb_000559_050--Hb_027998_030 Hb_002026_230 Hb_002026_230 Hb_000559_050--Hb_002026_230 Hb_000605_010 Hb_000605_010 Hb_000559_050--Hb_000605_010 Hb_004007_150 Hb_004007_150 Hb_000559_050--Hb_004007_150 Hb_002234_220 Hb_002234_220 Hb_000559_050--Hb_002234_220 Hb_003534_040 Hb_003534_040 Hb_000559_050--Hb_003534_040 Hb_002498_200 Hb_002498_200 Hb_011909_090--Hb_002498_200 Hb_122567_010 Hb_122567_010 Hb_011909_090--Hb_122567_010 Hb_001903_080 Hb_001903_080 Hb_011909_090--Hb_001903_080 Hb_019654_120 Hb_019654_120 Hb_011909_090--Hb_019654_120 Hb_001178_120 Hb_001178_120 Hb_011909_090--Hb_001178_120 Hb_011139_060 Hb_011139_060 Hb_001589_070--Hb_011139_060 Hb_020549_010 Hb_020549_010 Hb_001589_070--Hb_020549_010 Hb_001673_030 Hb_001673_030 Hb_001589_070--Hb_001673_030 Hb_002737_020 Hb_002737_020 Hb_001589_070--Hb_002737_020 Hb_001935_190 Hb_001935_190 Hb_001589_070--Hb_001935_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.616174 0.221525 0.00452468 0.0126818 0.199729 0.256261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis