Hb_003776_040

Information

Type -
Description -
Location Contig3776: 64275-65137
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12240g
description POPTRDRAFT_911513; hypothetical protein
nr
ID XP_011017945.1
description PREDICTED: RING finger protein 165-like isoform X2 [Populus euphratica]
swissprot
ID Q9M2S6
description E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1
trembl
ID B9IMK4
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0018s12240g PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38413: 64259-64824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003776_040 0.0 - - PREDICTED: RING finger protein 165-like isoform X2 [Populus euphratica]
2 Hb_003147_070 0.16888154 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
3 Hb_031822_010 0.1808716314 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
4 Hb_000445_100 0.1854459376 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
5 Hb_001769_110 0.1883075648 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
6 Hb_000421_230 0.1890999685 - - retinal degeneration B beta, putative [Ricinus communis]
7 Hb_080362_010 0.2012873925 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
8 Hb_004125_060 0.2046088623 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004108_240 0.204662078 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
10 Hb_018790_080 0.2083484536 - - hypothetical protein POPTR_0011s06335g [Populus trichocarpa]
11 Hb_004994_250 0.2087412396 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
12 Hb_000046_310 0.2092315092 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
13 Hb_001638_030 0.2095940792 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
14 Hb_009411_040 0.2127256994 - - -
15 Hb_000925_030 0.2145543414 - - ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_002685_200 0.2155543758 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
17 Hb_000003_240 0.2163199841 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007253_010 0.2177160341 - - syntaxin, putative [Ricinus communis]
19 Hb_090782_010 0.2190926 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
20 Hb_000749_070 0.2207588357 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]

Gene co-expression network

sample Hb_003776_040 Hb_003776_040 Hb_003147_070 Hb_003147_070 Hb_003776_040--Hb_003147_070 Hb_031822_010 Hb_031822_010 Hb_003776_040--Hb_031822_010 Hb_000445_100 Hb_000445_100 Hb_003776_040--Hb_000445_100 Hb_001769_110 Hb_001769_110 Hb_003776_040--Hb_001769_110 Hb_000421_230 Hb_000421_230 Hb_003776_040--Hb_000421_230 Hb_080362_010 Hb_080362_010 Hb_003776_040--Hb_080362_010 Hb_003147_070--Hb_031822_010 Hb_012545_030 Hb_012545_030 Hb_003147_070--Hb_012545_030 Hb_003147_070--Hb_080362_010 Hb_003147_070--Hb_000421_230 Hb_000510_230 Hb_000510_230 Hb_003147_070--Hb_000510_230 Hb_004125_060 Hb_004125_060 Hb_003147_070--Hb_004125_060 Hb_000072_190 Hb_000072_190 Hb_031822_010--Hb_000072_190 Hb_000046_310 Hb_000046_310 Hb_031822_010--Hb_000046_310 Hb_004994_250 Hb_004994_250 Hb_031822_010--Hb_004994_250 Hb_018790_050 Hb_018790_050 Hb_031822_010--Hb_018790_050 Hb_013358_020 Hb_013358_020 Hb_031822_010--Hb_013358_020 Hb_015026_040 Hb_015026_040 Hb_000445_100--Hb_015026_040 Hb_159809_050 Hb_159809_050 Hb_000445_100--Hb_159809_050 Hb_000445_100--Hb_000421_230 Hb_000749_070 Hb_000749_070 Hb_000445_100--Hb_000749_070 Hb_090782_010 Hb_090782_010 Hb_000445_100--Hb_090782_010 Hb_003581_280 Hb_003581_280 Hb_000445_100--Hb_003581_280 Hb_041895_040 Hb_041895_040 Hb_001769_110--Hb_041895_040 Hb_001769_110--Hb_000445_100 Hb_007253_010 Hb_007253_010 Hb_001769_110--Hb_007253_010 Hb_001769_110--Hb_000749_070 Hb_001769_110--Hb_159809_050 Hb_001769_110--Hb_015026_040 Hb_000421_230--Hb_003581_280 Hb_000045_260 Hb_000045_260 Hb_000421_230--Hb_000045_260 Hb_000421_230--Hb_004125_060 Hb_000638_280 Hb_000638_280 Hb_000421_230--Hb_000638_280 Hb_004108_240 Hb_004108_240 Hb_000421_230--Hb_004108_240 Hb_000925_030 Hb_000925_030 Hb_000421_230--Hb_000925_030 Hb_080362_010--Hb_000046_310 Hb_001728_020 Hb_001728_020 Hb_080362_010--Hb_001728_020 Hb_080362_010--Hb_018790_050 Hb_004117_170 Hb_004117_170 Hb_080362_010--Hb_004117_170 Hb_001376_010 Hb_001376_010 Hb_080362_010--Hb_001376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.32 71.4362 67.893 32.2949 4.47564 1.23911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.8945 28.7301 3.70303 6.12171 8.05958

CAGE analysis