Hb_003776_060

Information

Type -
Description -
Location Contig3776: 76143-81689
Sequence    

Annotation

kegg
ID rcu:RCOM_0509910
description ring finger protein, putative
nr
ID XP_012081109.1
description PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
swissprot
ID Q9LF64
description RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1
trembl
ID A0A067K232
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16964 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38417: 76258-81500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003776_060 0.0 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
2 Hb_004880_150 0.058668463 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
3 Hb_002811_100 0.0708409697 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
4 Hb_000327_250 0.0745144948 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
5 Hb_003544_030 0.076363069 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
6 Hb_023001_040 0.0813909841 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
7 Hb_001221_020 0.0830408483 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
8 Hb_017387_010 0.0839988815 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
9 Hb_002232_360 0.0853208957 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
10 Hb_016347_010 0.0868987843 - - protein transporter, putative [Ricinus communis]
11 Hb_001104_230 0.0872662915 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
12 Hb_001828_180 0.0922981937 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
13 Hb_042474_010 0.092383858 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
14 Hb_000025_190 0.0949544964 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
15 Hb_005663_110 0.0977189254 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
16 Hb_006452_120 0.0979208296 - - PREDICTED: protein FAM188A [Jatropha curcas]
17 Hb_029243_030 0.0984212423 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
18 Hb_000778_010 0.0987354414 - - hypothetical protein [Bacillus subtilis]
19 Hb_010775_040 0.0997961886 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
20 Hb_000363_190 0.1000879375 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003776_060 Hb_003776_060 Hb_004880_150 Hb_004880_150 Hb_003776_060--Hb_004880_150 Hb_002811_100 Hb_002811_100 Hb_003776_060--Hb_002811_100 Hb_000327_250 Hb_000327_250 Hb_003776_060--Hb_000327_250 Hb_003544_030 Hb_003544_030 Hb_003776_060--Hb_003544_030 Hb_023001_040 Hb_023001_040 Hb_003776_060--Hb_023001_040 Hb_001221_020 Hb_001221_020 Hb_003776_060--Hb_001221_020 Hb_004880_150--Hb_001221_020 Hb_002477_290 Hb_002477_290 Hb_004880_150--Hb_002477_290 Hb_004880_150--Hb_002811_100 Hb_000025_190 Hb_000025_190 Hb_004880_150--Hb_000025_190 Hb_005648_010 Hb_005648_010 Hb_004880_150--Hb_005648_010 Hb_002811_100--Hb_023001_040 Hb_010775_040 Hb_010775_040 Hb_002811_100--Hb_010775_040 Hb_000363_190 Hb_000363_190 Hb_002811_100--Hb_000363_190 Hb_002357_060 Hb_002357_060 Hb_002811_100--Hb_002357_060 Hb_000327_250--Hb_003544_030 Hb_016347_010 Hb_016347_010 Hb_000327_250--Hb_016347_010 Hb_005663_110 Hb_005663_110 Hb_000327_250--Hb_005663_110 Hb_004096_110 Hb_004096_110 Hb_000327_250--Hb_004096_110 Hb_021576_010 Hb_021576_010 Hb_000327_250--Hb_021576_010 Hb_001434_080 Hb_001434_080 Hb_000327_250--Hb_001434_080 Hb_003544_030--Hb_005663_110 Hb_003544_030--Hb_001434_080 Hb_003544_030--Hb_016347_010 Hb_006452_120 Hb_006452_120 Hb_003544_030--Hb_006452_120 Hb_017387_010 Hb_017387_010 Hb_003544_030--Hb_017387_010 Hb_003058_120 Hb_003058_120 Hb_023001_040--Hb_003058_120 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_005588_060 Hb_005588_060 Hb_023001_040--Hb_005588_060 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_000167_010 Hb_000167_010 Hb_023001_040--Hb_000167_010 Hb_000841_050 Hb_000841_050 Hb_001221_020--Hb_000841_050 Hb_001221_020--Hb_000025_190 Hb_001221_020--Hb_005648_010 Hb_001493_150 Hb_001493_150 Hb_001221_020--Hb_001493_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.1808 12.2021 9.97592 22.6311 9.6449 7.51595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.5246 16.527 11.6997 23.5127 12.0938

CAGE analysis