Hb_003777_010

Information

Type -
Description -
Location Contig3777: 2280-4680
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_010 0.0 - - -
2 Hb_005045_040 0.1636790691 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
3 Hb_001338_060 0.2312182991 - - -
4 Hb_071586_010 0.2314552738 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
5 Hb_001462_020 0.2319582689 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
6 Hb_006478_170 0.2474376436 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
7 Hb_096671_010 0.2576783186 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_000904_100 0.2585329479 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
9 Hb_108886_010 0.2715999098 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000220_140 0.2843830259 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
11 Hb_001976_080 0.3067325512 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
12 Hb_001545_190 0.314378944 - - hypothetical protein VITISV_012031 [Vitis vinifera]
13 Hb_122911_020 0.3158610279 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_004296_030 0.3205229877 - - PREDICTED: gamma-tubulin complex component 3 [Jatropha curcas]
15 Hb_000061_280 0.327762066 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
16 Hb_001545_030 0.3304440748 - - -
17 Hb_006970_070 0.3430722283 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007537_010 0.3435813464 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_014510_010 0.3439514535 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
20 Hb_000626_040 0.3529570795 - - PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003777_010 Hb_003777_010 Hb_005045_040 Hb_005045_040 Hb_003777_010--Hb_005045_040 Hb_001338_060 Hb_001338_060 Hb_003777_010--Hb_001338_060 Hb_071586_010 Hb_071586_010 Hb_003777_010--Hb_071586_010 Hb_001462_020 Hb_001462_020 Hb_003777_010--Hb_001462_020 Hb_006478_170 Hb_006478_170 Hb_003777_010--Hb_006478_170 Hb_096671_010 Hb_096671_010 Hb_003777_010--Hb_096671_010 Hb_005045_040--Hb_001338_060 Hb_108886_010 Hb_108886_010 Hb_005045_040--Hb_108886_010 Hb_001545_030 Hb_001545_030 Hb_005045_040--Hb_001545_030 Hb_004296_030 Hb_004296_030 Hb_005045_040--Hb_004296_030 Hb_005045_040--Hb_006478_170 Hb_001338_060--Hb_108886_010 Hb_001338_060--Hb_001545_030 Hb_001338_060--Hb_071586_010 Hb_001338_060--Hb_001462_020 Hb_071586_010--Hb_001462_020 Hb_071586_010--Hb_096671_010 Hb_000904_100 Hb_000904_100 Hb_071586_010--Hb_000904_100 Hb_001956_030 Hb_001956_030 Hb_071586_010--Hb_001956_030 Hb_089173_010 Hb_089173_010 Hb_071586_010--Hb_089173_010 Hb_001462_020--Hb_096671_010 Hb_001462_020--Hb_000904_100 Hb_001462_020--Hb_001956_030 Hb_001462_020--Hb_089173_010 Hb_014510_010 Hb_014510_010 Hb_006478_170--Hb_014510_010 Hb_006478_170--Hb_004296_030 Hb_005288_030 Hb_005288_030 Hb_006478_170--Hb_005288_030 Hb_000220_140 Hb_000220_140 Hb_006478_170--Hb_000220_140 Hb_096671_010--Hb_000904_100 Hb_096671_010--Hb_001956_030 Hb_096671_010--Hb_089173_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.118267 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.113696 0.0518627 0

CAGE analysis