Hb_003777_050

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig3777: 47804-49144
Sequence    

Annotation

kegg
ID rcu:RCOM_0453870
description transcription factor, putative
nr
ID XP_012066032.1
description PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6X5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25189 PE=4 SV=1
Gene Ontology
ID GO:0003682
description sequence-specific dna binding transcription factors

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38429: 47284-49466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_050 0.0 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
2 Hb_000009_450 0.1173382604 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
3 Hb_000110_320 0.1353796337 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
4 Hb_001437_130 0.1370497512 - - hypothetical protein F383_15788 [Gossypium arboreum]
5 Hb_024468_020 0.1498651791 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
6 Hb_001856_200 0.1502067909 - - Esterase PIR7B, putative [Ricinus communis]
7 Hb_141990_040 0.1543654402 - - Protein SCAR2, putative [Ricinus communis]
8 Hb_000033_020 0.1588042873 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000117_090 0.1631112448 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
10 Hb_000392_310 0.1659915012 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000465_230 0.166634487 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
12 Hb_000366_090 0.1666430263 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
13 Hb_003972_080 0.1723191496 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
14 Hb_004375_150 0.1730167899 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
15 Hb_000990_060 0.1794901087 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
16 Hb_168319_030 0.1806222471 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
17 Hb_027393_030 0.1817618708 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
18 Hb_001825_060 0.1840532095 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
19 Hb_001314_020 0.1846377248 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
20 Hb_000239_020 0.184693808 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]

Gene co-expression network

sample Hb_003777_050 Hb_003777_050 Hb_000009_450 Hb_000009_450 Hb_003777_050--Hb_000009_450 Hb_000110_320 Hb_000110_320 Hb_003777_050--Hb_000110_320 Hb_001437_130 Hb_001437_130 Hb_003777_050--Hb_001437_130 Hb_024468_020 Hb_024468_020 Hb_003777_050--Hb_024468_020 Hb_001856_200 Hb_001856_200 Hb_003777_050--Hb_001856_200 Hb_141990_040 Hb_141990_040 Hb_003777_050--Hb_141990_040 Hb_004375_150 Hb_004375_150 Hb_000009_450--Hb_004375_150 Hb_000117_090 Hb_000117_090 Hb_000009_450--Hb_000117_090 Hb_000033_020 Hb_000033_020 Hb_000009_450--Hb_000033_020 Hb_000009_450--Hb_141990_040 Hb_012760_070 Hb_012760_070 Hb_000009_450--Hb_012760_070 Hb_008566_050 Hb_008566_050 Hb_000009_450--Hb_008566_050 Hb_000366_090 Hb_000366_090 Hb_000110_320--Hb_000366_090 Hb_001956_070 Hb_001956_070 Hb_000110_320--Hb_001956_070 Hb_000110_320--Hb_000117_090 Hb_168319_030 Hb_168319_030 Hb_000110_320--Hb_168319_030 Hb_000175_060 Hb_000175_060 Hb_000110_320--Hb_000175_060 Hb_011173_050 Hb_011173_050 Hb_000110_320--Hb_011173_050 Hb_001437_130--Hb_000009_450 Hb_012545_050 Hb_012545_050 Hb_001437_130--Hb_012545_050 Hb_001437_130--Hb_000110_320 Hb_001488_370 Hb_001488_370 Hb_001437_130--Hb_001488_370 Hb_001235_110 Hb_001235_110 Hb_001437_130--Hb_001235_110 Hb_005224_010 Hb_005224_010 Hb_024468_020--Hb_005224_010 Hb_000016_190 Hb_000016_190 Hb_024468_020--Hb_000016_190 Hb_003972_080 Hb_003972_080 Hb_024468_020--Hb_003972_080 Hb_003609_020 Hb_003609_020 Hb_024468_020--Hb_003609_020 Hb_024468_020--Hb_000110_320 Hb_002217_020 Hb_002217_020 Hb_001856_200--Hb_002217_020 Hb_001825_060 Hb_001825_060 Hb_001856_200--Hb_001825_060 Hb_000987_060 Hb_000987_060 Hb_001856_200--Hb_000987_060 Hb_000210_010 Hb_000210_010 Hb_001856_200--Hb_000210_010 Hb_001856_200--Hb_141990_040 Hb_001856_200--Hb_000009_450 Hb_141990_040--Hb_001825_060 Hb_012573_040 Hb_012573_040 Hb_141990_040--Hb_012573_040 Hb_000304_030 Hb_000304_030 Hb_141990_040--Hb_000304_030 Hb_000549_040 Hb_000549_040 Hb_141990_040--Hb_000549_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8802 54.3367 24.6945 11.4158 7.35885 10.327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1834 75.8307 93.8277 28.8309 8.62029

CAGE analysis