Hb_003777_090

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig3777: 112150-115293
Sequence    

Annotation

kegg
ID rcu:RCOM_0453340
description hypothetical protein
nr
ID XP_012066016.1
description PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
swissprot
ID Q39117
description Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1
trembl
ID A0A067LFU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25180 PE=4 SV=1
Gene Ontology
ID GO:0005488
description trihelix transcription factor gt-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38431: 112174-115250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_090 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
2 Hb_000294_020 0.0571689171 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
3 Hb_000236_130 0.0654140203 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
4 Hb_063405_010 0.0678552489 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
5 Hb_000483_470 0.0707698786 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_003937_010 0.0758989449 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
7 Hb_022167_010 0.0768753123 - - Kinase, putative isoform 2 [Theobroma cacao]
8 Hb_000928_100 0.0820089038 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_000692_060 0.0826059969 - - calcium-dependent protein kinase, putative [Ricinus communis]
10 Hb_007254_010 0.0846835945 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
11 Hb_000890_170 0.0886809934 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
12 Hb_078954_030 0.0893463738 - - conserved hypothetical protein [Ricinus communis]
13 Hb_179129_010 0.0905404257 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
14 Hb_004346_050 0.0923677097 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
15 Hb_000025_700 0.0937310617 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
16 Hb_006618_110 0.0937867681 - - -
17 Hb_000155_020 0.0987557874 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000359_050 0.1008184496 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
19 Hb_004017_030 0.1016761038 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
20 Hb_000386_010 0.1034103913 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003777_090 Hb_003777_090 Hb_000294_020 Hb_000294_020 Hb_003777_090--Hb_000294_020 Hb_000236_130 Hb_000236_130 Hb_003777_090--Hb_000236_130 Hb_063405_010 Hb_063405_010 Hb_003777_090--Hb_063405_010 Hb_000483_470 Hb_000483_470 Hb_003777_090--Hb_000483_470 Hb_003937_010 Hb_003937_010 Hb_003777_090--Hb_003937_010 Hb_022167_010 Hb_022167_010 Hb_003777_090--Hb_022167_010 Hb_000294_020--Hb_000483_470 Hb_000294_020--Hb_000236_130 Hb_092516_010 Hb_092516_010 Hb_000294_020--Hb_092516_010 Hb_000928_100 Hb_000928_100 Hb_000294_020--Hb_000928_100 Hb_000294_020--Hb_022167_010 Hb_000236_130--Hb_022167_010 Hb_000692_060 Hb_000692_060 Hb_000236_130--Hb_000692_060 Hb_000890_170 Hb_000890_170 Hb_000236_130--Hb_000890_170 Hb_179129_010 Hb_179129_010 Hb_000236_130--Hb_179129_010 Hb_063405_010--Hb_003937_010 Hb_000705_010 Hb_000705_010 Hb_063405_010--Hb_000705_010 Hb_001321_010 Hb_001321_010 Hb_063405_010--Hb_001321_010 Hb_000270_090 Hb_000270_090 Hb_063405_010--Hb_000270_090 Hb_000697_020 Hb_000697_020 Hb_063405_010--Hb_000697_020 Hb_004109_140 Hb_004109_140 Hb_000483_470--Hb_004109_140 Hb_000483_470--Hb_000928_100 Hb_060534_010 Hb_060534_010 Hb_000483_470--Hb_060534_010 Hb_000025_700 Hb_000025_700 Hb_000483_470--Hb_000025_700 Hb_006618_110 Hb_006618_110 Hb_003937_010--Hb_006618_110 Hb_004994_030 Hb_004994_030 Hb_003937_010--Hb_004994_030 Hb_000155_020 Hb_000155_020 Hb_003937_010--Hb_000155_020 Hb_001014_240 Hb_001014_240 Hb_003937_010--Hb_001014_240 Hb_022167_010--Hb_000928_100 Hb_022167_010--Hb_179129_010 Hb_022167_010--Hb_000692_060 Hb_033834_020 Hb_033834_020 Hb_022167_010--Hb_033834_020 Hb_004346_050 Hb_004346_050 Hb_022167_010--Hb_004346_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.28464 35.1642 8.54322 0 0.0930507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0181491 0 0 1.38968 25.6669

CAGE analysis