Hb_003777_100

Information

Type -
Description -
Location Contig3777: 150535-151484
Sequence    

Annotation

kegg
ID rcu:RCOM_0239770
description Auxin-induced protein 5NG4, putative
nr
ID XP_002534346.1
description Auxin-induced protein 5NG4, putative [Ricinus communis]
swissprot
ID Q6NMB7
description WAT1-related protein At1g43650 OS=Arabidopsis thaliana GN=At1g43650 PE=2 SV=1
trembl
ID B9T7X7
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0239770 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at1g43650

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38432: 150689-151376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_100 0.0 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
2 Hb_000164_250 0.0304598429 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
3 Hb_010261_050 0.0548454205 - - DNA binding protein, putative [Ricinus communis]
4 Hb_032280_010 0.0705114101 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_000172_260 0.0726891618 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
6 Hb_003442_020 0.0734510664 - - ccd1, putative [Ricinus communis]
7 Hb_003839_060 0.0775390251 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
8 Hb_103931_010 0.0873490621 - - -
9 Hb_166700_010 0.0970524055 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
10 Hb_000628_100 0.0971246411 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
11 Hb_041067_010 0.1002513623 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
12 Hb_174644_010 0.1013583301 - - -
13 Hb_005695_050 0.1042592585 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
14 Hb_000174_130 0.1082382677 - - flowering locus T-like protein [Fagus crenata]
15 Hb_015085_010 0.1095481974 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
16 Hb_103000_010 0.1107715309 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
17 Hb_003337_010 0.1108549253 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000999_060 0.1121517162 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
19 Hb_123887_010 0.1148679512 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
20 Hb_002025_190 0.1156675142 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]

Gene co-expression network

sample Hb_003777_100 Hb_003777_100 Hb_000164_250 Hb_000164_250 Hb_003777_100--Hb_000164_250 Hb_010261_050 Hb_010261_050 Hb_003777_100--Hb_010261_050 Hb_032280_010 Hb_032280_010 Hb_003777_100--Hb_032280_010 Hb_000172_260 Hb_000172_260 Hb_003777_100--Hb_000172_260 Hb_003442_020 Hb_003442_020 Hb_003777_100--Hb_003442_020 Hb_003839_060 Hb_003839_060 Hb_003777_100--Hb_003839_060 Hb_000164_250--Hb_032280_010 Hb_000164_250--Hb_000172_260 Hb_041067_010 Hb_041067_010 Hb_000164_250--Hb_041067_010 Hb_103931_010 Hb_103931_010 Hb_000164_250--Hb_103931_010 Hb_000164_250--Hb_010261_050 Hb_010261_050--Hb_003442_020 Hb_166700_010 Hb_166700_010 Hb_010261_050--Hb_166700_010 Hb_103000_010 Hb_103000_010 Hb_010261_050--Hb_103000_010 Hb_003337_010 Hb_003337_010 Hb_010261_050--Hb_003337_010 Hb_000174_130 Hb_000174_130 Hb_010261_050--Hb_000174_130 Hb_032280_010--Hb_000172_260 Hb_032280_010--Hb_041067_010 Hb_004148_030 Hb_004148_030 Hb_032280_010--Hb_004148_030 Hb_032280_010--Hb_103931_010 Hb_000172_260--Hb_004148_030 Hb_000172_260--Hb_041067_010 Hb_000172_260--Hb_103931_010 Hb_003442_020--Hb_003839_060 Hb_003442_020--Hb_003337_010 Hb_001104_250 Hb_001104_250 Hb_003442_020--Hb_001104_250 Hb_123887_010 Hb_123887_010 Hb_003442_020--Hb_123887_010 Hb_174644_010 Hb_174644_010 Hb_003839_060--Hb_174644_010 Hb_003839_060--Hb_001104_250 Hb_003839_060--Hb_123887_010 Hb_023536_020 Hb_023536_020 Hb_003839_060--Hb_023536_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.240531 0.0599364 1.14012 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis