Hb_003777_130

Information

Type -
Description -
Location Contig3777: 213804-214976
Sequence    

Annotation

kegg
ID rcu:RCOM_0959160
description hypothetical protein
nr
ID XP_012080748.1
description PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
swissprot
ID A2Z9A6
description UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2
trembl
ID A0A067KG25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15198 PE=4 SV=1
Gene Ontology
ID GO:0003676
description upf0496 protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38441: 213698-215249
cDNA
(Sanger)
(ID:Location)		 021_P09.ab1: 213770-214483

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_130 0.0 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
2 Hb_000258_420 0.0626559206 - - sucrose transporter 2A [Hevea brasiliensis]
3 Hb_000815_310 0.0678924871 - - protein kinase, putative [Ricinus communis]
4 Hb_004375_110 0.0683754347 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
5 Hb_033152_090 0.0703114347 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
6 Hb_000671_030 0.0722377108 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
7 Hb_000640_190 0.0799510513 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
8 Hb_000261_280 0.081162832 - - BnaA10g23810D [Brassica napus]
9 Hb_003018_030 0.0872656049 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
10 Hb_002965_050 0.0881096895 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
11 Hb_012760_030 0.0919945517 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
12 Hb_000418_050 0.0943819351 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
13 Hb_000034_110 0.0948855117 - - sentrin/sumo-specific protease, putative [Ricinus communis]
14 Hb_011930_100 0.0953167284 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
15 Hb_003849_220 0.0962375452 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
16 Hb_005403_010 0.0980623166 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
17 Hb_002272_240 0.0980845165 - - catalytic, putative [Ricinus communis]
18 Hb_002304_050 0.0990290794 - - pyruvate kinase, putative [Ricinus communis]
19 Hb_005305_100 0.0998623479 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
20 Hb_003177_070 0.0999611131 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003777_130 Hb_003777_130 Hb_000258_420 Hb_000258_420 Hb_003777_130--Hb_000258_420 Hb_000815_310 Hb_000815_310 Hb_003777_130--Hb_000815_310 Hb_004375_110 Hb_004375_110 Hb_003777_130--Hb_004375_110 Hb_033152_090 Hb_033152_090 Hb_003777_130--Hb_033152_090 Hb_000671_030 Hb_000671_030 Hb_003777_130--Hb_000671_030 Hb_000640_190 Hb_000640_190 Hb_003777_130--Hb_000640_190 Hb_000258_420--Hb_033152_090 Hb_001699_010 Hb_001699_010 Hb_000258_420--Hb_001699_010 Hb_002272_240 Hb_002272_240 Hb_000258_420--Hb_002272_240 Hb_000680_120 Hb_000680_120 Hb_000258_420--Hb_000680_120 Hb_004531_150 Hb_004531_150 Hb_000258_420--Hb_004531_150 Hb_003540_250 Hb_003540_250 Hb_000815_310--Hb_003540_250 Hb_000815_310--Hb_033152_090 Hb_002965_050 Hb_002965_050 Hb_000815_310--Hb_002965_050 Hb_007416_260 Hb_007416_260 Hb_000815_310--Hb_007416_260 Hb_002876_210 Hb_002876_210 Hb_000815_310--Hb_002876_210 Hb_009372_020 Hb_009372_020 Hb_004375_110--Hb_009372_020 Hb_000664_090 Hb_000664_090 Hb_004375_110--Hb_000664_090 Hb_008165_020 Hb_008165_020 Hb_004375_110--Hb_008165_020 Hb_000015_200 Hb_000015_200 Hb_004375_110--Hb_000015_200 Hb_000034_110 Hb_000034_110 Hb_004375_110--Hb_000034_110 Hb_033152_090--Hb_000640_190 Hb_001009_120 Hb_001009_120 Hb_033152_090--Hb_001009_120 Hb_000956_040 Hb_000956_040 Hb_033152_090--Hb_000956_040 Hb_012760_030 Hb_012760_030 Hb_000671_030--Hb_012760_030 Hb_003849_220 Hb_003849_220 Hb_000671_030--Hb_003849_220 Hb_001623_110 Hb_001623_110 Hb_000671_030--Hb_001623_110 Hb_017948_030 Hb_017948_030 Hb_000671_030--Hb_017948_030 Hb_007919_110 Hb_007919_110 Hb_000671_030--Hb_007919_110 Hb_005403_010 Hb_005403_010 Hb_000640_190--Hb_005403_010 Hb_000640_190--Hb_001009_120 Hb_002249_020 Hb_002249_020 Hb_000640_190--Hb_002249_020 Hb_000300_550 Hb_000300_550 Hb_000640_190--Hb_000300_550 Hb_000045_160 Hb_000045_160 Hb_000640_190--Hb_000045_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1515 52.0625 49.3069 51.797 18.2093 11.961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3815 11.3145 12.3092 19.1497 31.7233

CAGE analysis