Hb_003777_160

Information

Type transcription factor
Description TF Family: bZIP
Location Contig3777: 232692-238530
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21500g
description POPTRDRAFT_651568; G-box binding factor 4 family protein
nr
ID XP_012080743.1
description PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
swissprot
ID P42777
description G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1
trembl
ID A0A067KEV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15194 PE=4 SV=1
Gene Ontology
ID GO:0005634
description g-box-binding factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_160 0.0 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
2 Hb_019153_020 0.0630724856 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
3 Hb_004635_050 0.0647540626 - - nucleolar phosphoprotein, putative [Ricinus communis]
4 Hb_000032_010 0.0724180065 - - crooked neck protein, putative [Ricinus communis]
5 Hb_033883_060 0.0740828305 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
6 Hb_000529_260 0.0753482878 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
7 Hb_002221_050 0.0781539491 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
8 Hb_004128_050 0.0785048202 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
9 Hb_001718_090 0.0793839274 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
10 Hb_002042_140 0.0807293775 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
11 Hb_000046_010 0.0833865748 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
12 Hb_000152_340 0.0834582237 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
13 Hb_000120_610 0.0836878814 - - mitotic control protein dis3, putative [Ricinus communis]
14 Hb_000510_310 0.083705506 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
15 Hb_006252_020 0.0837288628 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
16 Hb_000594_040 0.0843902163 - - hypothetical protein L484_013922 [Morus notabilis]
17 Hb_000856_140 0.0854098816 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
18 Hb_007520_030 0.0875476922 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
19 Hb_000418_140 0.087767689 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
20 Hb_007558_120 0.0879631991 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]

Gene co-expression network

sample Hb_003777_160 Hb_003777_160 Hb_019153_020 Hb_019153_020 Hb_003777_160--Hb_019153_020 Hb_004635_050 Hb_004635_050 Hb_003777_160--Hb_004635_050 Hb_000032_010 Hb_000032_010 Hb_003777_160--Hb_000032_010 Hb_033883_060 Hb_033883_060 Hb_003777_160--Hb_033883_060 Hb_000529_260 Hb_000529_260 Hb_003777_160--Hb_000529_260 Hb_002221_050 Hb_002221_050 Hb_003777_160--Hb_002221_050 Hb_019153_020--Hb_000032_010 Hb_140049_020 Hb_140049_020 Hb_019153_020--Hb_140049_020 Hb_000417_160 Hb_000417_160 Hb_019153_020--Hb_000417_160 Hb_019153_020--Hb_002221_050 Hb_019153_020--Hb_000529_260 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090 Hb_007943_120 Hb_007943_120 Hb_004635_050--Hb_007943_120 Hb_007558_120 Hb_007558_120 Hb_004635_050--Hb_007558_120 Hb_004635_050--Hb_033883_060 Hb_005883_010 Hb_005883_010 Hb_004635_050--Hb_005883_010 Hb_004635_050--Hb_019153_020 Hb_003040_020 Hb_003040_020 Hb_000032_010--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000032_010--Hb_004429_160 Hb_000753_100 Hb_000753_100 Hb_000032_010--Hb_000753_100 Hb_000191_130 Hb_000191_130 Hb_000032_010--Hb_000191_130 Hb_000856_140 Hb_000856_140 Hb_000032_010--Hb_000856_140 Hb_031042_070 Hb_031042_070 Hb_033883_060--Hb_031042_070 Hb_001633_040 Hb_001633_040 Hb_033883_060--Hb_001633_040 Hb_017075_030 Hb_017075_030 Hb_033883_060--Hb_017075_030 Hb_004920_130 Hb_004920_130 Hb_033883_060--Hb_004920_130 Hb_002659_060 Hb_002659_060 Hb_033883_060--Hb_002659_060 Hb_000529_260--Hb_002221_050 Hb_000424_010 Hb_000424_010 Hb_000529_260--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_000529_260--Hb_007885_070 Hb_000510_310 Hb_000510_310 Hb_000529_260--Hb_000510_310 Hb_000320_200 Hb_000320_200 Hb_000529_260--Hb_000320_200 Hb_000320_380 Hb_000320_380 Hb_002221_050--Hb_000320_380 Hb_002221_050--Hb_000424_010 Hb_002221_050--Hb_007885_070 Hb_002221_050--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.75051 10.2098 3.32867 3.90592 11.3034 7.36672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.15247 3.28557 4.77411 5.26262 3.9536

CAGE analysis