Hb_003777_210

Information

Type -
Description -
Location Contig3777: 284741-289324
Sequence    

Annotation

kegg
ID rcu:RCOM_0959340
description thioredoxin m(mitochondrial)-type, putative (EC:5.3.4.1)
nr
ID XP_002524295.1
description thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
swissprot
ID Q8L7S9
description Thioredoxin Y2, chloroplastic OS=Arabidopsis thaliana GN=At1g43560 PE=2 SV=1
trembl
ID B9SE76
description Thioredoxin m(Mitochondrial)-type, putative OS=Ricinus communis GN=RCOM_0959340 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38454: 284742-288895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_210 0.0 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
2 Hb_002391_220 0.0930071395 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
3 Hb_000834_030 0.098132695 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
4 Hb_000069_140 0.100380602 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
5 Hb_000042_200 0.1035900755 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
6 Hb_000599_280 0.109280451 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
7 Hb_000723_250 0.11616616 - - hypothetical protein JCGZ_16520 [Jatropha curcas]
8 Hb_001136_060 0.1175626046 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
9 Hb_001424_020 0.1184139831 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
10 Hb_012539_020 0.1194839313 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
11 Hb_000270_720 0.1219032844 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
12 Hb_000389_080 0.1237172287 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
13 Hb_033153_060 0.1252095082 - - Transcription elongation factor, putative [Ricinus communis]
14 Hb_011377_020 0.1273390373 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
15 Hb_002687_170 0.1283712371 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
16 Hb_000820_130 0.1284564454 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
17 Hb_001155_040 0.129376989 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
18 Hb_001769_100 0.1297812171 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
19 Hb_010582_010 0.1302891173 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
20 Hb_000445_490 0.1322984565 - - -

Gene co-expression network

sample Hb_003777_210 Hb_003777_210 Hb_002391_220 Hb_002391_220 Hb_003777_210--Hb_002391_220 Hb_000834_030 Hb_000834_030 Hb_003777_210--Hb_000834_030 Hb_000069_140 Hb_000069_140 Hb_003777_210--Hb_000069_140 Hb_000042_200 Hb_000042_200 Hb_003777_210--Hb_000042_200 Hb_000599_280 Hb_000599_280 Hb_003777_210--Hb_000599_280 Hb_000723_250 Hb_000723_250 Hb_003777_210--Hb_000723_250 Hb_000260_200 Hb_000260_200 Hb_002391_220--Hb_000260_200 Hb_002391_220--Hb_000069_140 Hb_000445_490 Hb_000445_490 Hb_002391_220--Hb_000445_490 Hb_001304_140 Hb_001304_140 Hb_002391_220--Hb_001304_140 Hb_000270_720 Hb_000270_720 Hb_002391_220--Hb_000270_720 Hb_002391_220--Hb_000599_280 Hb_012490_050 Hb_012490_050 Hb_000834_030--Hb_012490_050 Hb_000707_020 Hb_000707_020 Hb_000834_030--Hb_000707_020 Hb_005463_140 Hb_005463_140 Hb_000834_030--Hb_005463_140 Hb_001284_030 Hb_001284_030 Hb_000834_030--Hb_001284_030 Hb_000834_030--Hb_000042_200 Hb_000069_140--Hb_000260_200 Hb_012539_020 Hb_012539_020 Hb_000069_140--Hb_012539_020 Hb_000820_130 Hb_000820_130 Hb_000069_140--Hb_000820_130 Hb_001424_020 Hb_001424_020 Hb_000069_140--Hb_001424_020 Hb_000069_140--Hb_000270_720 Hb_033153_060 Hb_033153_060 Hb_000042_200--Hb_033153_060 Hb_002918_290 Hb_002918_290 Hb_000042_200--Hb_002918_290 Hb_001953_090 Hb_001953_090 Hb_000042_200--Hb_001953_090 Hb_000042_200--Hb_005463_140 Hb_000042_200--Hb_001284_030 Hb_004459_040 Hb_004459_040 Hb_000042_200--Hb_004459_040 Hb_011377_020 Hb_011377_020 Hb_000599_280--Hb_011377_020 Hb_000599_280--Hb_000270_720 Hb_004007_180 Hb_004007_180 Hb_000599_280--Hb_004007_180 Hb_000454_180 Hb_000454_180 Hb_000599_280--Hb_000454_180 Hb_000172_420 Hb_000172_420 Hb_000599_280--Hb_000172_420 Hb_000723_250--Hb_000042_200 Hb_000723_250--Hb_001953_090 Hb_000320_180 Hb_000320_180 Hb_000723_250--Hb_000320_180 Hb_000045_250 Hb_000045_250 Hb_000723_250--Hb_000045_250 Hb_002878_010 Hb_002878_010 Hb_000723_250--Hb_002878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.24473 2.41869 9.53953 24.3244 9.3752 28.3396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.1015 83.5481 27.8484 14.7067 22.5999

CAGE analysis