Hb_003777_250

Information

Type -
Description -
Location Contig3777: 333976-341480
Sequence    

Annotation

kegg
ID rcu:RCOM_0959480
description Cellulose synthase A catalytic subunit 6 [UDP-forming], putative (EC:2.4.1.12)
nr
ID XP_012080728.1
description PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
swissprot
ID Q94JQ6
description Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2
trembl
ID A0A067K3H7
description Cellulose synthase OS=Jatropha curcas GN=JCGZ_15180 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase a catalytic subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38459: 333844-340424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_250 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
2 Hb_005288_110 0.1122477871 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
3 Hb_006006_060 0.1223215331 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
4 Hb_001675_050 0.1312475029 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
5 Hb_005063_080 0.131354417 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
6 Hb_004710_020 0.1352037055 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
7 Hb_000328_050 0.1352738715 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
8 Hb_010344_030 0.1379444319 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010984_010 0.1391870028 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_016760_010 0.1406684435 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_000270_660 0.1432330232 - - purine permease, putative [Ricinus communis]
12 Hb_000200_350 0.1433551581 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
13 Hb_177343_010 0.1454961403 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
14 Hb_009020_040 0.1466113966 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
15 Hb_001009_260 0.1482894791 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
16 Hb_017098_010 0.1485104729 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_003632_030 0.1492737591 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
18 Hb_002740_190 0.1497857513 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
19 Hb_001348_090 0.1499879999 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
20 Hb_000011_220 0.1504467803 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]

Gene co-expression network

sample Hb_003777_250 Hb_003777_250 Hb_005288_110 Hb_005288_110 Hb_003777_250--Hb_005288_110 Hb_006006_060 Hb_006006_060 Hb_003777_250--Hb_006006_060 Hb_001675_050 Hb_001675_050 Hb_003777_250--Hb_001675_050 Hb_005063_080 Hb_005063_080 Hb_003777_250--Hb_005063_080 Hb_004710_020 Hb_004710_020 Hb_003777_250--Hb_004710_020 Hb_000328_050 Hb_000328_050 Hb_003777_250--Hb_000328_050 Hb_012165_020 Hb_012165_020 Hb_005288_110--Hb_012165_020 Hb_001266_120 Hb_001266_120 Hb_005288_110--Hb_001266_120 Hb_003632_030 Hb_003632_030 Hb_005288_110--Hb_003632_030 Hb_004738_110 Hb_004738_110 Hb_005288_110--Hb_004738_110 Hb_002320_090 Hb_002320_090 Hb_005288_110--Hb_002320_090 Hb_000200_350 Hb_000200_350 Hb_006006_060--Hb_000200_350 Hb_022693_130 Hb_022693_130 Hb_006006_060--Hb_022693_130 Hb_000388_150 Hb_000388_150 Hb_006006_060--Hb_000388_150 Hb_010344_030 Hb_010344_030 Hb_006006_060--Hb_010344_030 Hb_011926_040 Hb_011926_040 Hb_006006_060--Hb_011926_040 Hb_010984_020 Hb_010984_020 Hb_006006_060--Hb_010984_020 Hb_001976_060 Hb_001976_060 Hb_001675_050--Hb_001976_060 Hb_000505_080 Hb_000505_080 Hb_001675_050--Hb_000505_080 Hb_001675_050--Hb_012165_020 Hb_000815_230 Hb_000815_230 Hb_001675_050--Hb_000815_230 Hb_001623_080 Hb_001623_080 Hb_001675_050--Hb_001623_080 Hb_005618_150 Hb_005618_150 Hb_005063_080--Hb_005618_150 Hb_000665_270 Hb_000665_270 Hb_005063_080--Hb_000665_270 Hb_001907_070 Hb_001907_070 Hb_005063_080--Hb_001907_070 Hb_006911_070 Hb_006911_070 Hb_005063_080--Hb_006911_070 Hb_006198_130 Hb_006198_130 Hb_005063_080--Hb_006198_130 Hb_000336_200 Hb_000336_200 Hb_005063_080--Hb_000336_200 Hb_000496_130 Hb_000496_130 Hb_004710_020--Hb_000496_130 Hb_000085_070 Hb_000085_070 Hb_004710_020--Hb_000085_070 Hb_000454_100 Hb_000454_100 Hb_004710_020--Hb_000454_100 Hb_002828_060 Hb_002828_060 Hb_004710_020--Hb_002828_060 Hb_004710_020--Hb_006006_060 Hb_001348_090 Hb_001348_090 Hb_004710_020--Hb_001348_090 Hb_000014_040 Hb_000014_040 Hb_000328_050--Hb_000014_040 Hb_003642_010 Hb_003642_010 Hb_000328_050--Hb_003642_010 Hb_001584_340 Hb_001584_340 Hb_000328_050--Hb_001584_340 Hb_000328_050--Hb_006006_060 Hb_016219_010 Hb_016219_010 Hb_000328_050--Hb_016219_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.928009 0.789083 3.64797 5.19574 2.67173 2.51197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04928 0.538907 0.834498 2.48238 9.86961

CAGE analysis