Hb_003777_270

Information

Type -
Description -
Location Contig3777: 369568-372455
Sequence    

Annotation

kegg
ID rcu:RCOM_0959710
description 60S ribosomal protein L3, putative
nr
ID ADR71240.1
description 60S ribosomal protein L3B [Hevea brasiliensis]
swissprot
ID P35684
description 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2
trembl
ID I3NMK3
description 60S ribosomal protein L3B OS=Hevea brasiliensis GN=RPL3B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38468: 369450-372528 , PASA_asmbl_38469: 369658-369817
cDNA
(Sanger)
(ID:Location)		 001_K13.ab1: 369450-371472 , 004_O13.ab1: 369450-371488 , 007_N20.ab1: 369454-371492 , 012_G19.ab1: 369450-371530 , 024_I06.ab1: 369443-371378 , 030_G14.ab1: 369454-371425 , 033_B04.ab1: 369450-371514 , 033_M16.ab1: 369450-371423 , 041_O03.ab1: 369450-371424 , 044_H03.ab1: 369450-371474 , 045_C01.ab1: 369450-371397 , 046_F15.ab1: 369450-371530 , 046_N21.ab1: 369450-371428

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_270 0.0 - - 60S ribosomal protein L3B [Hevea brasiliensis]
2 Hb_004223_090 0.0579976327 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
3 Hb_033642_010 0.070221813 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
4 Hb_000099_240 0.0747907431 - - 60S ribosomal protein L7a, putative [Ricinus communis]
5 Hb_009111_050 0.0749678654 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
6 Hb_000032_570 0.0758262907 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
7 Hb_133271_020 0.0763709048 - - prohibitin, putative [Ricinus communis]
8 Hb_001030_120 0.0784334297 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_000923_020 0.0819089584 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
10 Hb_015026_120 0.0828455471 - - hypothetical protein TRIUR3_03502 [Triticum urartu]
11 Hb_028872_140 0.0829474079 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
12 Hb_158092_070 0.0841948314 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
13 Hb_004221_010 0.0848790988 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
14 Hb_002762_060 0.0871348968 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
15 Hb_123475_010 0.0873754727 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
16 Hb_000510_090 0.0875963068 - - 40S ribosomal protein S15 [Morus notabilis]
17 Hb_001246_100 0.0885394927 - - Ras-related small GTP-binding family protein [Theobroma cacao]
18 Hb_003392_040 0.0889908198 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
19 Hb_028639_060 0.0890543031 - - transporter, putative [Ricinus communis]
20 Hb_001454_140 0.0894463075 - - protein arginine n-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003777_270 Hb_003777_270 Hb_004223_090 Hb_004223_090 Hb_003777_270--Hb_004223_090 Hb_033642_010 Hb_033642_010 Hb_003777_270--Hb_033642_010 Hb_000099_240 Hb_000099_240 Hb_003777_270--Hb_000099_240 Hb_009111_050 Hb_009111_050 Hb_003777_270--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_003777_270--Hb_000032_570 Hb_133271_020 Hb_133271_020 Hb_003777_270--Hb_133271_020 Hb_000923_020 Hb_000923_020 Hb_004223_090--Hb_000923_020 Hb_004223_090--Hb_000099_240 Hb_000057_200 Hb_000057_200 Hb_004223_090--Hb_000057_200 Hb_039946_020 Hb_039946_020 Hb_004223_090--Hb_039946_020 Hb_003159_080 Hb_003159_080 Hb_004223_090--Hb_003159_080 Hb_028872_140 Hb_028872_140 Hb_033642_010--Hb_028872_140 Hb_033642_010--Hb_009111_050 Hb_002030_030 Hb_002030_030 Hb_033642_010--Hb_002030_030 Hb_001720_050 Hb_001720_050 Hb_033642_010--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_033642_010--Hb_000062_240 Hb_007590_010 Hb_007590_010 Hb_000099_240--Hb_007590_010 Hb_000099_240--Hb_000923_020 Hb_001358_030 Hb_001358_030 Hb_000099_240--Hb_001358_030 Hb_001677_210 Hb_001677_210 Hb_000099_240--Hb_001677_210 Hb_009111_050--Hb_028872_140 Hb_001030_120 Hb_001030_120 Hb_009111_050--Hb_001030_120 Hb_001454_210 Hb_001454_210 Hb_009111_050--Hb_001454_210 Hb_000190_140 Hb_000190_140 Hb_009111_050--Hb_000190_140 Hb_015306_020 Hb_015306_020 Hb_009111_050--Hb_015306_020 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_000032_570--Hb_001030_120 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_158092_070 Hb_158092_070 Hb_133271_020--Hb_158092_070 Hb_004662_030 Hb_004662_030 Hb_133271_020--Hb_004662_030 Hb_000975_290 Hb_000975_290 Hb_133271_020--Hb_000975_290 Hb_133271_020--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_133271_020--Hb_002686_270 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1286.07 565.371 299.837 313.953 972.721 1890.13
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1222.24 1200.01 1011.87 782.488 154.431

CAGE analysis