Hb_003777_290

Information

Type -
Description -
Location Contig3777: 376683-382131
Sequence    

Annotation

kegg
ID rcu:RCOM_0959720
description polypyrimidine tract binding protein, putative (EC:1.3.1.74)
nr
ID XP_002524303.1
description polypyrimidine tract binding protein, putative [Ricinus communis]
swissprot
ID Q6ICX4
description Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1
trembl
ID B9SE84
description Polypyrimidine tract binding protein, putative OS=Ricinus communis GN=RCOM_0959720 PE=4 SV=1
Gene Ontology
ID GO:0000932
description polypyrimidine tract-binding protein homolog 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38470: 377947-379792 , PASA_asmbl_38471: 373851-382096 , PASA_asmbl_38472: 380325-380533
cDNA
(Sanger)
(ID:Location)		 049_K17.ab1: 373851-376773

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_290 0.0 - - polypyrimidine tract binding protein, putative [Ricinus communis]
2 Hb_021576_010 0.0554660457 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
3 Hb_000979_220 0.061648239 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
4 Hb_004096_110 0.0629049436 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
5 Hb_011224_160 0.0710245692 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
6 Hb_000363_190 0.0731140946 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
7 Hb_005489_040 0.0731551027 - - PREDICTED: cullin-1 [Jatropha curcas]
8 Hb_000409_050 0.0734949808 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
9 Hb_011883_020 0.0745273411 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_001269_380 0.0778079925 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
11 Hb_003528_050 0.0784133518 - - protein transporter, putative [Ricinus communis]
12 Hb_065500_020 0.0787807288 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
13 Hb_000327_250 0.0792956098 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
14 Hb_027506_010 0.0800405221 - - PREDICTED: cullin-4 [Jatropha curcas]
15 Hb_001828_180 0.0805959099 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
16 Hb_003683_010 0.0828161142 - - longevity assurance factor, putative [Ricinus communis]
17 Hb_000088_270 0.0833280228 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
18 Hb_016347_010 0.0843976861 - - protein transporter, putative [Ricinus communis]
19 Hb_000836_460 0.0846993771 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
20 Hb_006189_020 0.0860605668 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]

Gene co-expression network

sample Hb_003777_290 Hb_003777_290 Hb_021576_010 Hb_021576_010 Hb_003777_290--Hb_021576_010 Hb_000979_220 Hb_000979_220 Hb_003777_290--Hb_000979_220 Hb_004096_110 Hb_004096_110 Hb_003777_290--Hb_004096_110 Hb_011224_160 Hb_011224_160 Hb_003777_290--Hb_011224_160 Hb_000363_190 Hb_000363_190 Hb_003777_290--Hb_000363_190 Hb_005489_040 Hb_005489_040 Hb_003777_290--Hb_005489_040 Hb_021576_010--Hb_000979_220 Hb_021576_010--Hb_004096_110 Hb_000327_250 Hb_000327_250 Hb_021576_010--Hb_000327_250 Hb_016347_010 Hb_016347_010 Hb_021576_010--Hb_016347_010 Hb_001828_180 Hb_001828_180 Hb_021576_010--Hb_001828_180 Hb_003528_050 Hb_003528_050 Hb_000979_220--Hb_003528_050 Hb_027506_010 Hb_027506_010 Hb_000979_220--Hb_027506_010 Hb_000979_220--Hb_004096_110 Hb_002046_010 Hb_002046_010 Hb_000979_220--Hb_002046_010 Hb_004096_110--Hb_000327_250 Hb_011883_020 Hb_011883_020 Hb_004096_110--Hb_011883_020 Hb_001269_600 Hb_001269_600 Hb_004096_110--Hb_001269_600 Hb_000510_340 Hb_000510_340 Hb_011224_160--Hb_000510_340 Hb_000347_450 Hb_000347_450 Hb_011224_160--Hb_000347_450 Hb_000088_270 Hb_000088_270 Hb_011224_160--Hb_000088_270 Hb_011224_160--Hb_000363_190 Hb_011224_160--Hb_021576_010 Hb_000363_190--Hb_001828_180 Hb_000663_060 Hb_000663_060 Hb_000363_190--Hb_000663_060 Hb_000409_050 Hb_000409_050 Hb_000363_190--Hb_000409_050 Hb_000398_060 Hb_000398_060 Hb_000363_190--Hb_000398_060 Hb_002232_360 Hb_002232_360 Hb_000363_190--Hb_002232_360 Hb_002301_100 Hb_002301_100 Hb_000363_190--Hb_002301_100 Hb_005489_040--Hb_000409_050 Hb_073171_070 Hb_073171_070 Hb_005489_040--Hb_073171_070 Hb_005260_030 Hb_005260_030 Hb_005489_040--Hb_005260_030 Hb_003117_030 Hb_003117_030 Hb_005489_040--Hb_003117_030 Hb_007413_010 Hb_007413_010 Hb_005489_040--Hb_007413_010 Hb_188281_040 Hb_188281_040 Hb_005489_040--Hb_188281_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.68303 15.164 16.5925 15.9103 9.01266 10.5866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4487 10.5443 9.52013 26.32 16.4827

CAGE analysis