Hb_003777_310

Information

Type -
Description -
Location Contig3777: 386092-389910
Sequence    

Annotation

kegg
ID rcu:RCOM_0959740
description hypothetical protein
nr
ID XP_002524305.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9C8C1
description Protein LIKE COV 2 OS=Arabidopsis thaliana GN=LCV2 PE=2 SV=1
trembl
ID B9SE86
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0959740 PE=4 SV=1
Gene Ontology
ID GO:0005768
description protein like cov 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38474: 384718-389839 , PASA_asmbl_38475: 388307-388505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_310 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000318_290 0.0361182774 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
3 Hb_002445_120 0.0517971744 - - secretory carrier membrane protein, putative [Ricinus communis]
4 Hb_005170_040 0.0672264848 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
5 Hb_023001_060 0.0682738174 - - PREDICTED: importin-11 [Jatropha curcas]
6 Hb_000608_320 0.0721248678 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
7 Hb_004032_150 0.0773101185 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
8 Hb_054865_150 0.0773180447 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
9 Hb_004767_100 0.0777027388 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
10 Hb_002716_130 0.0780416804 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
11 Hb_005054_100 0.0804062728 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
12 Hb_000127_040 0.0821016815 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
13 Hb_000120_670 0.0851856125 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
14 Hb_000185_040 0.0855085535 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
15 Hb_001344_010 0.0860253574 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
16 Hb_007638_030 0.0863227358 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
17 Hb_002740_180 0.0867406961 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000159_090 0.087131545 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
19 Hb_002675_070 0.0876996649 - - PREDICTED: protein CASC3 [Jatropha curcas]
20 Hb_005490_030 0.0888360784 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_003777_310 Hb_003777_310 Hb_000318_290 Hb_000318_290 Hb_003777_310--Hb_000318_290 Hb_002445_120 Hb_002445_120 Hb_003777_310--Hb_002445_120 Hb_005170_040 Hb_005170_040 Hb_003777_310--Hb_005170_040 Hb_023001_060 Hb_023001_060 Hb_003777_310--Hb_023001_060 Hb_000608_320 Hb_000608_320 Hb_003777_310--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_003777_310--Hb_004032_150 Hb_054865_150 Hb_054865_150 Hb_000318_290--Hb_054865_150 Hb_000318_290--Hb_000608_320 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_004767_100 Hb_004767_100 Hb_000318_290--Hb_004767_100 Hb_002445_120--Hb_000318_290 Hb_000056_260 Hb_000056_260 Hb_002445_120--Hb_000056_260 Hb_001633_130 Hb_001633_130 Hb_002445_120--Hb_001633_130 Hb_044736_010 Hb_044736_010 Hb_002445_120--Hb_044736_010 Hb_000107_200 Hb_000107_200 Hb_002445_120--Hb_000107_200 Hb_005170_040--Hb_000608_320 Hb_005170_040--Hb_004767_100 Hb_005170_040--Hb_000318_290 Hb_007059_010 Hb_007059_010 Hb_005170_040--Hb_007059_010 Hb_023344_030 Hb_023344_030 Hb_005170_040--Hb_023344_030 Hb_001344_010 Hb_001344_010 Hb_023001_060--Hb_001344_010 Hb_005490_030 Hb_005490_030 Hb_023001_060--Hb_005490_030 Hb_005054_100 Hb_005054_100 Hb_023001_060--Hb_005054_100 Hb_003697_030 Hb_003697_030 Hb_023001_060--Hb_003697_030 Hb_023001_060--Hb_000318_290 Hb_002027_290 Hb_002027_290 Hb_000608_320--Hb_002027_290 Hb_002716_130 Hb_002716_130 Hb_000608_320--Hb_002716_130 Hb_002811_060 Hb_002811_060 Hb_000608_320--Hb_002811_060 Hb_004032_150--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_148644_010 Hb_148644_010 Hb_004032_150--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_004032_150--Hb_001489_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.64246 4.52376 3.953 10.0611 8.44177 13.8353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.48627 6.65243 9.57287 7.69567 5.07867

CAGE analysis