Hb_003777_330

Information

Type -
Description -
Location Contig3777: 397112-402682
Sequence    

Annotation

kegg
ID rcu:RCOM_0959890
description ribonucleoside-diphosphate reductase large chain, putative (EC:1.17.4.1)
nr
ID XP_002524309.1
description ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
swissprot
ID Q9SJ20
description Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1
trembl
ID B9SE90
description Ribonucleoside-diphosphate reductase OS=Ricinus communis GN=RCOM_0959890 PE=3 SV=1
Gene Ontology
ID GO:0004748
description ribonucleoside-diphosphate reductase large subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38481: 398948-399305
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_330 0.0 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
2 Hb_001720_050 0.0507611127 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
3 Hb_000923_020 0.0617229106 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
4 Hb_181235_010 0.0675480484 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
5 Hb_004195_160 0.0743276729 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
6 Hb_000224_170 0.0749572667 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
7 Hb_082609_020 0.075402858 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004600_040 0.07618268 - - -
9 Hb_007426_230 0.0769071018 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
10 Hb_003642_060 0.0774047845 - - hypothetical protein RCOM_1189860 [Ricinus communis]
11 Hb_000418_100 0.0774830789 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
12 Hb_000421_260 0.0780695981 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
13 Hb_000152_820 0.0784007363 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
14 Hb_012634_010 0.0823578257 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
15 Hb_000300_060 0.0826582641 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
16 Hb_010710_110 0.0834089899 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
17 Hb_000062_240 0.0842944049 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
18 Hb_002154_030 0.0843890757 - - RNA binding protein, putative [Ricinus communis]
19 Hb_003097_150 0.0846455053 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
20 Hb_000853_110 0.0849637619 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]

Gene co-expression network

sample Hb_003777_330 Hb_003777_330 Hb_001720_050 Hb_001720_050 Hb_003777_330--Hb_001720_050 Hb_000923_020 Hb_000923_020 Hb_003777_330--Hb_000923_020 Hb_181235_010 Hb_181235_010 Hb_003777_330--Hb_181235_010 Hb_004195_160 Hb_004195_160 Hb_003777_330--Hb_004195_160 Hb_000224_170 Hb_000224_170 Hb_003777_330--Hb_000224_170 Hb_082609_020 Hb_082609_020 Hb_003777_330--Hb_082609_020 Hb_000421_260 Hb_000421_260 Hb_001720_050--Hb_000421_260 Hb_000418_100 Hb_000418_100 Hb_001720_050--Hb_000418_100 Hb_033642_010 Hb_033642_010 Hb_001720_050--Hb_033642_010 Hb_002890_340 Hb_002890_340 Hb_001720_050--Hb_002890_340 Hb_000152_820 Hb_000152_820 Hb_001720_050--Hb_000152_820 Hb_000099_240 Hb_000099_240 Hb_000923_020--Hb_000099_240 Hb_004223_090 Hb_004223_090 Hb_000923_020--Hb_004223_090 Hb_002375_020 Hb_002375_020 Hb_000923_020--Hb_002375_020 Hb_001377_290 Hb_001377_290 Hb_000923_020--Hb_001377_290 Hb_000621_080 Hb_000621_080 Hb_000923_020--Hb_000621_080 Hb_002154_030 Hb_002154_030 Hb_181235_010--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_181235_010--Hb_002477_030 Hb_000062_240 Hb_000062_240 Hb_181235_010--Hb_000062_240 Hb_000032_290 Hb_000032_290 Hb_181235_010--Hb_000032_290 Hb_000406_220 Hb_000406_220 Hb_181235_010--Hb_000406_220 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110 Hb_001623_420 Hb_001623_420 Hb_000224_170--Hb_001623_420 Hb_031527_040 Hb_031527_040 Hb_000224_170--Hb_031527_040 Hb_000926_330 Hb_000926_330 Hb_000224_170--Hb_000926_330 Hb_000061_420 Hb_000061_420 Hb_000224_170--Hb_000061_420 Hb_000224_170--Hb_181235_010 Hb_082609_020--Hb_000418_100 Hb_001584_330 Hb_001584_330 Hb_082609_020--Hb_001584_330 Hb_012634_010 Hb_012634_010 Hb_082609_020--Hb_012634_010 Hb_009838_100 Hb_009838_100 Hb_082609_020--Hb_009838_100 Hb_082609_020--Hb_000062_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48545 1.04352 0.495306 0.421813 2.09533 2.0248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44548 1.8341 1.76103 0.948663 0.362488

CAGE analysis