Hb_003780_020

Information

Type -
Description -
Location Contig3780: 36187-36822
Sequence    

Annotation

kegg
ID pmum:103322525
description prolyl 4-hydroxylase subunit alpha-1
nr
ID XP_006606599.1
description PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2 [Glycine max]
swissprot
ID Q9ZW86
description Prolyl 4-hydroxylase 1 OS=Arabidopsis thaliana GN=P4H1 PE=1 SV=1
trembl
ID K7N5J4
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005794
description prolyl 4-hydroxylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38487: 36360-36965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003780_020 0.0 - - PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2 [Glycine max]
2 Hb_012678_010 0.0582941461 - - PREDICTED: outer envelope protein 61-like [Gossypium raimondii]
3 Hb_012678_020 0.1103267034 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
4 Hb_007558_100 0.1328404217 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
5 Hb_002150_040 0.1368924249 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
6 Hb_005218_020 0.1370326332 - - Uncharacterized protein isoform 3 [Theobroma cacao]
7 Hb_004881_030 0.1379329789 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
8 Hb_000586_030 0.1384322487 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
9 Hb_000237_040 0.1388113186 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
10 Hb_004046_030 0.1393139486 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
11 Hb_099116_010 0.1396176069 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000784_070 0.1428826387 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
13 Hb_004116_170 0.1440285751 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
14 Hb_007383_020 0.1448637753 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000976_100 0.1468607675 - - eukaryotic translation elongation factor, putative [Ricinus communis]
16 Hb_009529_040 0.1485454634 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
17 Hb_002603_050 0.1487560322 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
18 Hb_127552_060 0.1510152697 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
19 Hb_003052_030 0.151278721 - - 6-phosphogluconate dehydrogenase family protein isoform 1 [Theobroma cacao]
20 Hb_000950_010 0.1515067704 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]

Gene co-expression network

sample Hb_003780_020 Hb_003780_020 Hb_012678_010 Hb_012678_010 Hb_003780_020--Hb_012678_010 Hb_012678_020 Hb_012678_020 Hb_003780_020--Hb_012678_020 Hb_007558_100 Hb_007558_100 Hb_003780_020--Hb_007558_100 Hb_002150_040 Hb_002150_040 Hb_003780_020--Hb_002150_040 Hb_005218_020 Hb_005218_020 Hb_003780_020--Hb_005218_020 Hb_004881_030 Hb_004881_030 Hb_003780_020--Hb_004881_030 Hb_012678_010--Hb_012678_020 Hb_012678_010--Hb_007558_100 Hb_000784_070 Hb_000784_070 Hb_012678_010--Hb_000784_070 Hb_138475_010 Hb_138475_010 Hb_012678_010--Hb_138475_010 Hb_000586_030 Hb_000586_030 Hb_012678_010--Hb_000586_030 Hb_012678_020--Hb_007558_100 Hb_002093_060 Hb_002093_060 Hb_012678_020--Hb_002093_060 Hb_007383_020 Hb_007383_020 Hb_012678_020--Hb_007383_020 Hb_004046_030 Hb_004046_030 Hb_012678_020--Hb_004046_030 Hb_000800_090 Hb_000800_090 Hb_012678_020--Hb_000800_090 Hb_003206_110 Hb_003206_110 Hb_012678_020--Hb_003206_110 Hb_000429_150 Hb_000429_150 Hb_007558_100--Hb_000429_150 Hb_002414_060 Hb_002414_060 Hb_007558_100--Hb_002414_060 Hb_002686_310 Hb_002686_310 Hb_007558_100--Hb_002686_310 Hb_055062_040 Hb_055062_040 Hb_007558_100--Hb_055062_040 Hb_084670_010 Hb_084670_010 Hb_007558_100--Hb_084670_010 Hb_000159_090 Hb_000159_090 Hb_002150_040--Hb_000159_090 Hb_000140_280 Hb_000140_280 Hb_002150_040--Hb_000140_280 Hb_002150_040--Hb_005218_020 Hb_000069_210 Hb_000069_210 Hb_002150_040--Hb_000069_210 Hb_086085_020 Hb_086085_020 Hb_002150_040--Hb_086085_020 Hb_000136_100 Hb_000136_100 Hb_002150_040--Hb_000136_100 Hb_000066_030 Hb_000066_030 Hb_005218_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_005218_020--Hb_003998_040 Hb_007765_040 Hb_007765_040 Hb_005218_020--Hb_007765_040 Hb_000917_130 Hb_000917_130 Hb_005218_020--Hb_000917_130 Hb_003529_030 Hb_003529_030 Hb_005218_020--Hb_003529_030 Hb_004055_120 Hb_004055_120 Hb_005218_020--Hb_004055_120 Hb_001104_130 Hb_001104_130 Hb_004881_030--Hb_001104_130 Hb_000107_110 Hb_000107_110 Hb_004881_030--Hb_000107_110 Hb_002603_050 Hb_002603_050 Hb_004881_030--Hb_002603_050 Hb_003052_180 Hb_003052_180 Hb_004881_030--Hb_003052_180 Hb_033152_070 Hb_033152_070 Hb_004881_030--Hb_033152_070 Hb_000928_190 Hb_000928_190 Hb_004881_030--Hb_000928_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.81042 1.39113 3.40579 18.0093 4.33426 10.7295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.16498 3.61623 6.78153 14.4642 11.8989

CAGE analysis