Hb_003780_030

Information

Type -
Description -
Location Contig3780: 37900-41863
Sequence    

Annotation

kegg
ID cit:102627760
description uncharacterized LOC102627760
nr
ID XP_012066254.1
description PREDICTED: protein CMSS1 [Jatropha curcas]
swissprot
ID Q5FVR6
description Protein CMSS1 OS=Rattus norvegicus GN=Cmss1 PE=2 SV=1
trembl
ID A0A067LFJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23821 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38487: 36360-36965 , PASA_asmbl_38488: 37982-41911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003780_030 0.0 - - PREDICTED: protein CMSS1 [Jatropha curcas]
2 Hb_007576_080 0.0617055841 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
3 Hb_038172_010 0.069106953 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
4 Hb_003525_010 0.0745830161 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
5 Hb_000317_240 0.0763904126 - - PREDICTED: protein DYAD [Jatropha curcas]
6 Hb_001481_090 0.0768093254 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
7 Hb_014109_040 0.0782620447 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
8 Hb_000610_050 0.0786130353 - - skp1, putative [Ricinus communis]
9 Hb_002534_150 0.0788546056 - - catalytic, putative [Ricinus communis]
10 Hb_001828_060 0.0801115736 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
11 Hb_003428_030 0.0802802435 - - tRNA, putative [Ricinus communis]
12 Hb_027472_040 0.0811743275 - - SKP1 [Hevea brasiliensis]
13 Hb_002253_100 0.0817555467 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
14 Hb_008554_060 0.0842467499 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
15 Hb_005725_270 0.0847978343 - - PREDICTED: uncharacterized protein LOC105630802 isoform X1 [Jatropha curcas]
16 Hb_000589_120 0.0852213285 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
17 Hb_003126_050 0.0855453208 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
18 Hb_003435_020 0.0866454006 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_002197_050 0.0871721403 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
20 Hb_005697_060 0.0876784407 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003780_030 Hb_003780_030 Hb_007576_080 Hb_007576_080 Hb_003780_030--Hb_007576_080 Hb_038172_010 Hb_038172_010 Hb_003780_030--Hb_038172_010 Hb_003525_010 Hb_003525_010 Hb_003780_030--Hb_003525_010 Hb_000317_240 Hb_000317_240 Hb_003780_030--Hb_000317_240 Hb_001481_090 Hb_001481_090 Hb_003780_030--Hb_001481_090 Hb_014109_040 Hb_014109_040 Hb_003780_030--Hb_014109_040 Hb_007576_080--Hb_014109_040 Hb_000589_120 Hb_000589_120 Hb_007576_080--Hb_000589_120 Hb_007423_040 Hb_007423_040 Hb_007576_080--Hb_007423_040 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_002585_040 Hb_002585_040 Hb_007576_080--Hb_002585_040 Hb_038172_010--Hb_001481_090 Hb_038172_010--Hb_002585_040 Hb_027472_040 Hb_027472_040 Hb_038172_010--Hb_027472_040 Hb_038172_010--Hb_014109_040 Hb_000342_100 Hb_000342_100 Hb_038172_010--Hb_000342_100 Hb_000092_170 Hb_000092_170 Hb_003525_010--Hb_000092_170 Hb_000085_160 Hb_000085_160 Hb_003525_010--Hb_000085_160 Hb_000334_280 Hb_000334_280 Hb_003525_010--Hb_000334_280 Hb_000225_040 Hb_000225_040 Hb_003525_010--Hb_000225_040 Hb_003428_030 Hb_003428_030 Hb_003525_010--Hb_003428_030 Hb_000215_110 Hb_000215_110 Hb_003525_010--Hb_000215_110 Hb_002530_030 Hb_002530_030 Hb_000317_240--Hb_002530_030 Hb_000757_060 Hb_000757_060 Hb_000317_240--Hb_000757_060 Hb_000768_090 Hb_000768_090 Hb_000317_240--Hb_000768_090 Hb_000465_460 Hb_000465_460 Hb_000317_240--Hb_000465_460 Hb_058999_020 Hb_058999_020 Hb_000317_240--Hb_058999_020 Hb_000504_140 Hb_000504_140 Hb_000317_240--Hb_000504_140 Hb_001766_110 Hb_001766_110 Hb_001481_090--Hb_001766_110 Hb_000041_270 Hb_000041_270 Hb_001481_090--Hb_000041_270 Hb_003952_090 Hb_003952_090 Hb_001481_090--Hb_003952_090 Hb_003126_080 Hb_003126_080 Hb_001481_090--Hb_003126_080 Hb_000656_400 Hb_000656_400 Hb_001481_090--Hb_000656_400 Hb_014109_040--Hb_000589_120 Hb_003125_120 Hb_003125_120 Hb_014109_040--Hb_003125_120 Hb_000563_230 Hb_000563_230 Hb_014109_040--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_014109_040--Hb_003935_020 Hb_014109_040--Hb_000334_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.57944 4.70387 5.37515 5.44784 9.26016 8.51105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.50396 14.1833 5.4164 9.04718 4.19327

CAGE analysis