Hb_003781_010

Information

Type -
Description -
Location Contig3781: 43215-45478
Sequence    

Annotation

kegg
ID egr:104415508
description histone H2AX
nr
ID XP_010025126.1
description PREDICTED: histone H2AX [Eucalyptus grandis]
swissprot
ID P35063
description Histone H2AX OS=Picea abies PE=2 SV=1
trembl
ID A0A059B728
description Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_H04433 PE=3 SV=1
Gene Ontology
ID GO:0043229
description histone h2ax

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38495: 43210-43531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003781_010 0.0 - - PREDICTED: histone H2AX [Eucalyptus grandis]
2 Hb_000022_160 0.1508738257 - - -
3 Hb_006909_010 0.1593701257 - - 5-oxoprolinase, putative [Ricinus communis]
4 Hb_003910_060 0.1689004737 - - PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Jatropha curcas]
5 Hb_174473_010 0.1703214382 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
6 Hb_006274_050 0.174531415 - - hypothetical protein VITISV_022618 [Vitis vinifera]
7 Hb_004411_060 0.1758749212 - - acetolactate synthase, putative [Ricinus communis]
8 Hb_000922_030 0.1768847677 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
9 Hb_001170_030 0.1771940079 - - synaptonemal complex protein, putative [Ricinus communis]
10 Hb_004449_080 0.1788401623 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
11 Hb_164898_010 0.1794399774 - - Cysteine-rich protein, putative [Theobroma cacao]
12 Hb_004224_020 0.1803897889 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
13 Hb_015292_060 0.1804175304 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
14 Hb_000183_030 0.1818258391 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
15 Hb_019337_020 0.1837047531 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
16 Hb_098315_080 0.1843788225 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
17 Hb_000358_050 0.1859770699 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
18 Hb_005892_020 0.1883306195 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
19 Hb_003544_050 0.1910336601 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
20 Hb_002780_060 0.1910550332 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003781_010 Hb_003781_010 Hb_000022_160 Hb_000022_160 Hb_003781_010--Hb_000022_160 Hb_006909_010 Hb_006909_010 Hb_003781_010--Hb_006909_010 Hb_003910_060 Hb_003910_060 Hb_003781_010--Hb_003910_060 Hb_174473_010 Hb_174473_010 Hb_003781_010--Hb_174473_010 Hb_006274_050 Hb_006274_050 Hb_003781_010--Hb_006274_050 Hb_004411_060 Hb_004411_060 Hb_003781_010--Hb_004411_060 Hb_015292_060 Hb_015292_060 Hb_000022_160--Hb_015292_060 Hb_000890_070 Hb_000890_070 Hb_000022_160--Hb_000890_070 Hb_003340_010 Hb_003340_010 Hb_000022_160--Hb_003340_010 Hb_001366_270 Hb_001366_270 Hb_000022_160--Hb_001366_270 Hb_009486_090 Hb_009486_090 Hb_000022_160--Hb_009486_090 Hb_001377_350 Hb_001377_350 Hb_000022_160--Hb_001377_350 Hb_164898_010 Hb_164898_010 Hb_006909_010--Hb_164898_010 Hb_004449_080 Hb_004449_080 Hb_006909_010--Hb_004449_080 Hb_000106_120 Hb_000106_120 Hb_006909_010--Hb_000106_120 Hb_003498_130 Hb_003498_130 Hb_006909_010--Hb_003498_130 Hb_000028_390 Hb_000028_390 Hb_006909_010--Hb_000028_390 Hb_003294_090 Hb_003294_090 Hb_006909_010--Hb_003294_090 Hb_001862_180 Hb_001862_180 Hb_003910_060--Hb_001862_180 Hb_000366_040 Hb_000366_040 Hb_003910_060--Hb_000366_040 Hb_002316_160 Hb_002316_160 Hb_003910_060--Hb_002316_160 Hb_000388_090 Hb_000388_090 Hb_003910_060--Hb_000388_090 Hb_002055_040 Hb_002055_040 Hb_003910_060--Hb_002055_040 Hb_002063_020 Hb_002063_020 Hb_003910_060--Hb_002063_020 Hb_010427_010 Hb_010427_010 Hb_174473_010--Hb_010427_010 Hb_000159_100 Hb_000159_100 Hb_174473_010--Hb_000159_100 Hb_004224_020 Hb_004224_020 Hb_174473_010--Hb_004224_020 Hb_003688_160 Hb_003688_160 Hb_174473_010--Hb_003688_160 Hb_002099_080 Hb_002099_080 Hb_174473_010--Hb_002099_080 Hb_000365_240 Hb_000365_240 Hb_006274_050--Hb_000365_240 Hb_003089_020 Hb_003089_020 Hb_006274_050--Hb_003089_020 Hb_000922_030 Hb_000922_030 Hb_006274_050--Hb_000922_030 Hb_003467_030 Hb_003467_030 Hb_006274_050--Hb_003467_030 Hb_003994_110 Hb_003994_110 Hb_006274_050--Hb_003994_110 Hb_001435_030 Hb_001435_030 Hb_006274_050--Hb_001435_030 Hb_098315_080 Hb_098315_080 Hb_004411_060--Hb_098315_080 Hb_004411_060--Hb_164898_010 Hb_004411_060--Hb_006909_010 Hb_002005_100 Hb_002005_100 Hb_004411_060--Hb_002005_100 Hb_025193_040 Hb_025193_040 Hb_004411_060--Hb_025193_040 Hb_003747_020 Hb_003747_020 Hb_004411_060--Hb_003747_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.908357 0.798654 0.387379 0.851429 0.151386 1.37891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.309616 0.278327 1.41837 2.16324 1.72078

CAGE analysis