Hb_003783_050

Information

Type -
Description -
Location Contig3783: 101491-106949
Sequence    

Annotation

kegg
ID rcu:RCOM_0594830
description hypothetical protein
nr
ID XP_002527807.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q54VM3
description TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1
trembl
ID B9SP88
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0594830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38500: 101434-102304 , PASA_asmbl_38503: 106357-106770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003783_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000941_120 0.091639412 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
3 Hb_036388_010 0.0954300344 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
4 Hb_030312_030 0.098099498 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
5 Hb_001916_150 0.1031006478 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
6 Hb_035834_010 0.1052990101 - - zinc finger protein, putative [Ricinus communis]
7 Hb_000445_370 0.1105620232 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
8 Hb_003778_020 0.1156567088 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_000417_380 0.1156942812 - - SecY protein transport family protein [Theobroma cacao]
10 Hb_001365_010 0.1170256297 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
11 Hb_000441_050 0.1205449256 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
12 Hb_004326_010 0.1209410354 - - cationic amino acid transporter, putative [Ricinus communis]
13 Hb_001195_660 0.1234572451 - - metalloendopeptidase, putative [Ricinus communis]
14 Hb_000077_310 0.1239471981 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
15 Hb_000768_150 0.124138975 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
16 Hb_000997_320 0.1242431468 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
17 Hb_001195_370 0.1284938061 - - -
18 Hb_006736_050 0.1287914407 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
19 Hb_000115_360 0.1300164091 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
20 Hb_000120_740 0.1316258454 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003783_050 Hb_003783_050 Hb_000941_120 Hb_000941_120 Hb_003783_050--Hb_000941_120 Hb_036388_010 Hb_036388_010 Hb_003783_050--Hb_036388_010 Hb_030312_030 Hb_030312_030 Hb_003783_050--Hb_030312_030 Hb_001916_150 Hb_001916_150 Hb_003783_050--Hb_001916_150 Hb_035834_010 Hb_035834_010 Hb_003783_050--Hb_035834_010 Hb_000445_370 Hb_000445_370 Hb_003783_050--Hb_000445_370 Hb_000941_120--Hb_030312_030 Hb_000283_140 Hb_000283_140 Hb_000941_120--Hb_000283_140 Hb_004326_010 Hb_004326_010 Hb_000941_120--Hb_004326_010 Hb_004943_040 Hb_004943_040 Hb_000941_120--Hb_004943_040 Hb_000157_140 Hb_000157_140 Hb_000941_120--Hb_000157_140 Hb_000768_150 Hb_000768_150 Hb_036388_010--Hb_000768_150 Hb_036388_010--Hb_035834_010 Hb_000997_320 Hb_000997_320 Hb_036388_010--Hb_000997_320 Hb_006736_050 Hb_006736_050 Hb_036388_010--Hb_006736_050 Hb_000417_380 Hb_000417_380 Hb_036388_010--Hb_000417_380 Hb_001195_370 Hb_001195_370 Hb_030312_030--Hb_001195_370 Hb_001054_060 Hb_001054_060 Hb_030312_030--Hb_001054_060 Hb_003006_080 Hb_003006_080 Hb_030312_030--Hb_003006_080 Hb_002805_090 Hb_002805_090 Hb_030312_030--Hb_002805_090 Hb_003778_020 Hb_003778_020 Hb_001916_150--Hb_003778_020 Hb_000300_680 Hb_000300_680 Hb_001916_150--Hb_000300_680 Hb_003226_250 Hb_003226_250 Hb_001916_150--Hb_003226_250 Hb_001916_150--Hb_030312_030 Hb_114917_010 Hb_114917_010 Hb_001916_150--Hb_114917_010 Hb_035834_010--Hb_000445_370 Hb_000441_050 Hb_000441_050 Hb_035834_010--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_035834_010--Hb_004242_170 Hb_000120_740 Hb_000120_740 Hb_035834_010--Hb_000120_740 Hb_003582_090 Hb_003582_090 Hb_000445_370--Hb_003582_090 Hb_006916_030 Hb_006916_030 Hb_000445_370--Hb_006916_030 Hb_000066_040 Hb_000066_040 Hb_000445_370--Hb_000066_040 Hb_000167_040 Hb_000167_040 Hb_000445_370--Hb_000167_040 Hb_009193_010 Hb_009193_010 Hb_000445_370--Hb_009193_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61052 9.05591 17.6471 33.9077 3.23111 2.39718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35615 2.87872 5.50082 14.3647 43.3594

CAGE analysis