Hb_003784_040

Information

Type -
Description -
Location Contig3784: 31241-36962
Sequence    

Annotation

kegg
ID rcu:RCOM_0356490
description Afadin- and alpha-actinin-binding protein, putative
nr
ID XP_002533091.1
description Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
swissprot
ID Q6NRK1
description Afadin- and alpha-actinin-binding protein A OS=Xenopus laevis GN=ssx2ip-a PE=1 SV=1
trembl
ID B9T4C2
description Afadin-and alpha-actinin-binding protein, putative OS=Ricinus communis GN=RCOM_0356490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003784_040 0.0 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
2 Hb_005504_040 0.0687471852 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010180_030 0.0897189902 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
4 Hb_000139_280 0.1034080546 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
5 Hb_005725_150 0.1078658041 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
6 Hb_001478_020 0.1096376444 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
7 Hb_001780_080 0.1100268943 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
8 Hb_000051_080 0.1128207349 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
9 Hb_006275_060 0.1232657796 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
10 Hb_002307_020 0.1314789288 - - PREDICTED: histone H1-like [Jatropha curcas]
11 Hb_002007_040 0.1336320567 - - unnamed protein product [Coffea canephora]
12 Hb_001501_070 0.1408393887 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
13 Hb_038044_010 0.1458100431 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
14 Hb_000500_340 0.1500311427 - - PREDICTED: exonuclease 1 [Jatropha curcas]
15 Hb_000260_040 0.1526677229 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
16 Hb_029510_130 0.1547517493 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
17 Hb_000155_150 0.1551802296 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
18 Hb_000190_220 0.1598996243 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
19 Hb_001890_020 0.1636244919 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
20 Hb_000172_090 0.1665289866 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]

Gene co-expression network

sample Hb_003784_040 Hb_003784_040 Hb_005504_040 Hb_005504_040 Hb_003784_040--Hb_005504_040 Hb_010180_030 Hb_010180_030 Hb_003784_040--Hb_010180_030 Hb_000139_280 Hb_000139_280 Hb_003784_040--Hb_000139_280 Hb_005725_150 Hb_005725_150 Hb_003784_040--Hb_005725_150 Hb_001478_020 Hb_001478_020 Hb_003784_040--Hb_001478_020 Hb_001780_080 Hb_001780_080 Hb_003784_040--Hb_001780_080 Hb_005504_040--Hb_000139_280 Hb_005504_040--Hb_010180_030 Hb_005504_040--Hb_001780_080 Hb_006275_060 Hb_006275_060 Hb_005504_040--Hb_006275_060 Hb_005504_040--Hb_005725_150 Hb_010180_030--Hb_001478_020 Hb_001501_070 Hb_001501_070 Hb_010180_030--Hb_001501_070 Hb_010180_030--Hb_001780_080 Hb_010180_030--Hb_005725_150 Hb_000190_220 Hb_000190_220 Hb_000139_280--Hb_000190_220 Hb_000139_280--Hb_001780_080 Hb_000260_040 Hb_000260_040 Hb_000139_280--Hb_000260_040 Hb_000139_280--Hb_006275_060 Hb_000051_080 Hb_000051_080 Hb_005725_150--Hb_000051_080 Hb_005725_150--Hb_001478_020 Hb_002007_040 Hb_002007_040 Hb_005725_150--Hb_002007_040 Hb_005725_150--Hb_006275_060 Hb_001478_020--Hb_001501_070 Hb_038044_010 Hb_038044_010 Hb_001478_020--Hb_038044_010 Hb_001478_020--Hb_001780_080 Hb_029510_130 Hb_029510_130 Hb_001478_020--Hb_029510_130 Hb_001780_080--Hb_001501_070 Hb_000365_210 Hb_000365_210 Hb_001780_080--Hb_000365_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.294734 0.630237 17.6304 7.15867 0.27399 0.236107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03641 1.34451 1.87087 2.32254 1.60626

CAGE analysis