Hb_003785_040

Information

Type -
Description -
Location Contig3785: 59062-69269
Sequence    

Annotation

kegg
ID tcc:TCM_043919
description Single-stranded nucleic acid binding R3H protein isoform 1
nr
ID XP_012074666.1
description PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q80TM6
description R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=1 SV=2
trembl
ID A0A067KI62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10418 PE=4 SV=1
Gene Ontology
ID GO:0003676
description camp-regulated phosphoprotein 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38509: 63833-63986 , PASA_asmbl_38510: 64060-64162 , PASA_asmbl_38511: 68781-69124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003785_040 0.0 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
2 Hb_002615_090 0.0525280043 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
3 Hb_031527_020 0.0543951203 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
4 Hb_004128_050 0.0584098253 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
5 Hb_009503_030 0.058653763 - - protein dimerization, putative [Ricinus communis]
6 Hb_000395_130 0.0620180047 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
7 Hb_000092_020 0.0620323555 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
8 Hb_000502_050 0.0625769211 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
9 Hb_000169_130 0.0643996825 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
10 Hb_000796_030 0.0673534228 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
11 Hb_005489_080 0.067357147 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000574_440 0.06795214 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
13 Hb_001718_090 0.0681074313 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
14 Hb_002835_230 0.0686128585 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_000345_140 0.0694016417 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
16 Hb_000479_220 0.0699308274 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
17 Hb_000035_290 0.0699909977 - - RNA recognition motif-containing family protein [Populus trichocarpa]
18 Hb_144831_010 0.0708076767 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
19 Hb_000174_220 0.070824947 - - cohesin subunit rad21, putative [Ricinus communis]
20 Hb_002235_300 0.0709467149 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003785_040 Hb_003785_040 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_003785_040--Hb_004128_050 Hb_009503_030 Hb_009503_030 Hb_003785_040--Hb_009503_030 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_000960_100 Hb_000960_100 Hb_002615_090--Hb_000960_100 Hb_002235_300 Hb_002235_300 Hb_002615_090--Hb_002235_300 Hb_002253_080 Hb_002253_080 Hb_002615_090--Hb_002253_080 Hb_000878_180 Hb_000878_180 Hb_002615_090--Hb_000878_180 Hb_001767_140 Hb_001767_140 Hb_002615_090--Hb_001767_140 Hb_005489_080 Hb_005489_080 Hb_031527_020--Hb_005489_080 Hb_111198_010 Hb_111198_010 Hb_031527_020--Hb_111198_010 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_000732_120 Hb_000732_120 Hb_031527_020--Hb_000732_120 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250 Hb_006252_020 Hb_006252_020 Hb_004128_050--Hb_006252_020 Hb_002042_140 Hb_002042_140 Hb_004128_050--Hb_002042_140 Hb_004128_050--Hb_005489_080 Hb_000768_070 Hb_000768_070 Hb_004128_050--Hb_000768_070 Hb_000190_120 Hb_000190_120 Hb_004128_050--Hb_000190_120 Hb_000796_030 Hb_000796_030 Hb_009503_030--Hb_000796_030 Hb_000574_440 Hb_000574_440 Hb_009503_030--Hb_000574_440 Hb_006420_040 Hb_006420_040 Hb_009503_030--Hb_006420_040 Hb_009545_100 Hb_009545_100 Hb_009503_030--Hb_009545_100 Hb_000502_050 Hb_000502_050 Hb_009503_030--Hb_000502_050 Hb_000395_130--Hb_000092_020 Hb_001080_230 Hb_001080_230 Hb_000395_130--Hb_001080_230 Hb_000003_190 Hb_000003_190 Hb_000395_130--Hb_000003_190 Hb_000441_120 Hb_000441_120 Hb_000395_130--Hb_000441_120 Hb_000395_130--Hb_006420_040 Hb_012779_090 Hb_012779_090 Hb_000395_130--Hb_012779_090 Hb_000092_020--Hb_001080_230 Hb_000092_020--Hb_000003_190 Hb_000574_540 Hb_000574_540 Hb_000092_020--Hb_000574_540 Hb_011491_010 Hb_011491_010 Hb_000092_020--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0976 19.8466 9.73196 8.28418 19.2916 16.3207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.44399 10.825 12.2371 10.2148 10.305

CAGE analysis