Hb_003786_020

Information

Type -
Description -
Location Contig3786: 40450-45464
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12160g
description POPTRDRAFT_1083368; hypothetical protein
nr
ID XP_012079112.1
description PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
swissprot
ID Q9SVM0
description BTB/POZ domain-containing protein At3g50780 OS=Arabidopsis thaliana GN=At3g50780 PE=2 SV=1
trembl
ID A0A067KHU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12286 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003786_020 0.0 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
2 Hb_001258_040 0.0959616601 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
3 Hb_022693_060 0.1176411926 - - -
4 Hb_011242_040 0.1234556673 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
5 Hb_094947_010 0.1257105632 - - surfeit locus protein, putative [Ricinus communis]
6 Hb_002025_200 0.1268508407 - - -
7 Hb_000538_200 0.1345685358 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
8 Hb_001488_330 0.1363682633 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
9 Hb_002686_290 0.137185507 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
10 Hb_002636_160 0.1376775241 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g13630 [Jatropha curcas]
11 Hb_001545_120 0.138755137 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
12 Hb_022092_090 0.1408807833 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
13 Hb_000574_390 0.1412333011 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
14 Hb_002783_260 0.141311172 - - hypothetical protein JCGZ_08219 [Jatropha curcas]
15 Hb_000631_080 0.1416303445 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
16 Hb_000022_250 0.1425240552 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
17 Hb_027450_010 0.1426129509 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
18 Hb_003663_060 0.1453108723 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Jatropha curcas]
19 Hb_000236_070 0.1454890207 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000635_250 0.1464464305 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]

Gene co-expression network

sample Hb_003786_020 Hb_003786_020 Hb_001258_040 Hb_001258_040 Hb_003786_020--Hb_001258_040 Hb_022693_060 Hb_022693_060 Hb_003786_020--Hb_022693_060 Hb_011242_040 Hb_011242_040 Hb_003786_020--Hb_011242_040 Hb_094947_010 Hb_094947_010 Hb_003786_020--Hb_094947_010 Hb_002025_200 Hb_002025_200 Hb_003786_020--Hb_002025_200 Hb_000538_200 Hb_000538_200 Hb_003786_020--Hb_000538_200 Hb_001258_040--Hb_022693_060 Hb_000635_250 Hb_000635_250 Hb_001258_040--Hb_000635_250 Hb_001545_120 Hb_001545_120 Hb_001258_040--Hb_001545_120 Hb_000000_250 Hb_000000_250 Hb_001258_040--Hb_000000_250 Hb_000022_250 Hb_000022_250 Hb_001258_040--Hb_000022_250 Hb_007426_030 Hb_007426_030 Hb_001258_040--Hb_007426_030 Hb_105123_010 Hb_105123_010 Hb_022693_060--Hb_105123_010 Hb_002205_070 Hb_002205_070 Hb_022693_060--Hb_002205_070 Hb_000959_260 Hb_000959_260 Hb_022693_060--Hb_000959_260 Hb_022693_060--Hb_000635_250 Hb_000373_280 Hb_000373_280 Hb_022693_060--Hb_000373_280 Hb_000574_390 Hb_000574_390 Hb_011242_040--Hb_000574_390 Hb_001140_220 Hb_001140_220 Hb_011242_040--Hb_001140_220 Hb_015198_020 Hb_015198_020 Hb_011242_040--Hb_015198_020 Hb_000047_030 Hb_000047_030 Hb_011242_040--Hb_000047_030 Hb_011242_040--Hb_001258_040 Hb_000258_270 Hb_000258_270 Hb_011242_040--Hb_000258_270 Hb_000123_260 Hb_000123_260 Hb_094947_010--Hb_000123_260 Hb_004055_140 Hb_004055_140 Hb_094947_010--Hb_004055_140 Hb_094947_010--Hb_001258_040 Hb_001488_330 Hb_001488_330 Hb_094947_010--Hb_001488_330 Hb_000274_020 Hb_000274_020 Hb_094947_010--Hb_000274_020 Hb_001157_060 Hb_001157_060 Hb_094947_010--Hb_001157_060 Hb_002681_070 Hb_002681_070 Hb_002025_200--Hb_002681_070 Hb_002783_260 Hb_002783_260 Hb_002025_200--Hb_002783_260 Hb_002193_010 Hb_002193_010 Hb_002025_200--Hb_002193_010 Hb_002025_200--Hb_000574_390 Hb_012799_180 Hb_012799_180 Hb_002025_200--Hb_012799_180 Hb_001019_190 Hb_001019_190 Hb_002025_200--Hb_001019_190 Hb_004600_040 Hb_004600_040 Hb_000538_200--Hb_004600_040 Hb_000538_200--Hb_001157_060 Hb_000815_210 Hb_000815_210 Hb_000538_200--Hb_000815_210 Hb_001736_040 Hb_001736_040 Hb_000538_200--Hb_001736_040 Hb_011673_030 Hb_011673_030 Hb_000538_200--Hb_011673_030 Hb_000421_260 Hb_000421_260 Hb_000538_200--Hb_000421_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.875059 0.386217 0.0592225 0.268239 0.748195 1.50914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.681184 1.21275 1.10731 0.315774 0.99769

CAGE analysis