Hb_003786_030

Information

Type -
Description -
Location Contig3786: 51296-53167
Sequence    

Annotation

kegg
ID egr:104416842
description TMV resistance protein N-like
nr
ID CDY63595.1
description BnaUnng00830D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078J910
description BnaUnng00830D protein OS=Brassica napus GN=BnaUnng00830D PE=4 SV=1
Gene Ontology
ID GO:0009522
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003786_030 0.0 - - BnaUnng00830D [Brassica napus]
2 Hb_000724_040 0.0260692023 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
3 Hb_002973_060 0.0298204238 - - conserved hypothetical protein [Ricinus communis]
4 Hb_135887_010 0.0300000762 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
5 Hb_005228_050 0.0310831859 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
6 Hb_011108_010 0.0423773713 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
7 Hb_104014_020 0.05103203 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
8 Hb_000023_100 0.0538342106 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
9 Hb_000115_030 0.0613419774 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
10 Hb_151290_010 0.0618256147 - - unnamed protein product [Vitis vinifera]
11 Hb_000580_200 0.063552046 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
12 Hb_003025_170 0.0649305641 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
13 Hb_000077_040 0.0651740393 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
14 Hb_005991_030 0.0724306692 - - copper ion binding protein, putative [Ricinus communis]
15 Hb_023342_010 0.0759959909 - - -
16 Hb_000540_080 0.0770022526 - - PREDICTED: laccase-17 [Jatropha curcas]
17 Hb_099263_010 0.0839321374 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
18 Hb_001593_040 0.0890734841 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
19 Hb_096907_010 0.0922078662 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
20 Hb_001053_120 0.095111875 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]

Gene co-expression network

sample Hb_003786_030 Hb_003786_030 Hb_000724_040 Hb_000724_040 Hb_003786_030--Hb_000724_040 Hb_002973_060 Hb_002973_060 Hb_003786_030--Hb_002973_060 Hb_135887_010 Hb_135887_010 Hb_003786_030--Hb_135887_010 Hb_005228_050 Hb_005228_050 Hb_003786_030--Hb_005228_050 Hb_011108_010 Hb_011108_010 Hb_003786_030--Hb_011108_010 Hb_104014_020 Hb_104014_020 Hb_003786_030--Hb_104014_020 Hb_000724_040--Hb_005228_050 Hb_000724_040--Hb_002973_060 Hb_000724_040--Hb_011108_010 Hb_000724_040--Hb_135887_010 Hb_000115_030 Hb_000115_030 Hb_000724_040--Hb_000115_030 Hb_002973_060--Hb_000115_030 Hb_002973_060--Hb_005228_050 Hb_002973_060--Hb_104014_020 Hb_000077_040 Hb_000077_040 Hb_002973_060--Hb_000077_040 Hb_135887_010--Hb_011108_010 Hb_135887_010--Hb_005228_050 Hb_005991_030 Hb_005991_030 Hb_135887_010--Hb_005991_030 Hb_000580_200 Hb_000580_200 Hb_135887_010--Hb_000580_200 Hb_005228_050--Hb_011108_010 Hb_000540_080 Hb_000540_080 Hb_005228_050--Hb_000540_080 Hb_011108_010--Hb_005991_030 Hb_099263_010 Hb_099263_010 Hb_011108_010--Hb_099263_010 Hb_003025_170 Hb_003025_170 Hb_104014_020--Hb_003025_170 Hb_104014_020--Hb_000077_040 Hb_001593_040 Hb_001593_040 Hb_104014_020--Hb_001593_040 Hb_104014_020--Hb_000115_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.365691 1.57006 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.7005

CAGE analysis