Hb_003786_060

Information

Type -
Description -
Location Contig3786: 102971-103782
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12140g
description POPTRDRAFT_764658; hypothetical protein
nr
ID XP_012079553.1
description PREDICTED: transmembrane protein 220 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HEL5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12140g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003786_060 0.0 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
2 Hb_006538_050 0.0503514943 - - hypothetical protein RCOM_1308310 [Ricinus communis]
3 Hb_003052_070 0.0660679902 - - PREDICTED: peroxidase 11 [Jatropha curcas]
4 Hb_007747_030 0.0731649762 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
5 Hb_000567_310 0.0793259523 - - Miraculin precursor, putative [Ricinus communis]
6 Hb_001328_110 0.0890333247 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
7 Hb_000933_200 0.0960674364 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
8 Hb_027288_010 0.0987532025 - - mutt domain protein, putative [Ricinus communis]
9 Hb_002232_400 0.0991233006 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
10 Hb_000120_710 0.099287248 - - unnamed protein product [Vitis vinifera]
11 Hb_000617_340 0.1051449031 - - respiratory burst oxidase B [Manihot esculenta]
12 Hb_098795_010 0.1055331495 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
13 Hb_006006_070 0.1061411981 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_003253_020 0.1091415539 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
15 Hb_007483_030 0.1095558911 - - -
16 Hb_000441_170 0.1114911234 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
17 Hb_000948_070 0.112255577 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
18 Hb_002232_370 0.1125445405 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
19 Hb_058526_010 0.1137883276 - - -
20 Hb_003166_040 0.1146969776 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_003786_060 Hb_003786_060 Hb_006538_050 Hb_006538_050 Hb_003786_060--Hb_006538_050 Hb_003052_070 Hb_003052_070 Hb_003786_060--Hb_003052_070 Hb_007747_030 Hb_007747_030 Hb_003786_060--Hb_007747_030 Hb_000567_310 Hb_000567_310 Hb_003786_060--Hb_000567_310 Hb_001328_110 Hb_001328_110 Hb_003786_060--Hb_001328_110 Hb_000933_200 Hb_000933_200 Hb_003786_060--Hb_000933_200 Hb_000120_710 Hb_000120_710 Hb_006538_050--Hb_000120_710 Hb_006538_050--Hb_001328_110 Hb_006538_050--Hb_003052_070 Hb_006538_050--Hb_000567_310 Hb_000617_340 Hb_000617_340 Hb_006538_050--Hb_000617_340 Hb_003052_070--Hb_000567_310 Hb_003052_070--Hb_001328_110 Hb_027288_010 Hb_027288_010 Hb_003052_070--Hb_027288_010 Hb_003052_070--Hb_007747_030 Hb_007483_030 Hb_007483_030 Hb_007747_030--Hb_007483_030 Hb_007747_030--Hb_027288_010 Hb_003166_040 Hb_003166_040 Hb_007747_030--Hb_003166_040 Hb_058526_010 Hb_058526_010 Hb_007747_030--Hb_058526_010 Hb_000567_310--Hb_001328_110 Hb_000567_310--Hb_027288_010 Hb_001173_050 Hb_001173_050 Hb_000567_310--Hb_001173_050 Hb_008705_070 Hb_008705_070 Hb_001328_110--Hb_008705_070 Hb_001328_110--Hb_000120_710 Hb_025526_090 Hb_025526_090 Hb_001328_110--Hb_025526_090 Hb_003253_020 Hb_003253_020 Hb_000933_200--Hb_003253_020 Hb_000933_200--Hb_000617_340 Hb_010407_120 Hb_010407_120 Hb_000933_200--Hb_010407_120 Hb_000513_110 Hb_000513_110 Hb_000933_200--Hb_000513_110 Hb_001544_040 Hb_001544_040 Hb_000933_200--Hb_001544_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.152098 0.0928398 0.153988 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.15349 0

CAGE analysis