Hb_003786_080

Information

Type -
Description -
Location Contig3786: 135554-142683
Sequence    

Annotation

kegg
ID rcu:RCOM_0604220
description electron transporter, putative
nr
ID XP_002522392.1
description electron transporter, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8S3
description Electron transporter, putative OS=Ricinus communis GN=RCOM_0604220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38519: 136938-137293 , PASA_asmbl_38520: 140638-143477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003786_080 0.0 - - electron transporter, putative [Ricinus communis]
2 Hb_000035_210 0.1667307216 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
3 Hb_001638_310 0.1748840057 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
4 Hb_000438_130 0.1763124824 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
5 Hb_000977_170 0.1772589881 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_006487_040 0.1792023878 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
7 Hb_000802_050 0.1795348206 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
8 Hb_001386_090 0.1795481913 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
9 Hb_001711_060 0.181647189 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
10 Hb_005488_160 0.18505725 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
11 Hb_003549_140 0.1878159025 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_003992_050 0.1880808957 - - delta 9 desaturase, putative [Ricinus communis]
13 Hb_004117_150 0.1899324671 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
14 Hb_002498_170 0.190030215 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
15 Hb_001352_080 0.1910036831 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
16 Hb_000130_330 0.1910056339 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
17 Hb_000169_070 0.195794612 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
18 Hb_000322_040 0.1959882318 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
19 Hb_006252_030 0.1973575577 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
20 Hb_000056_310 0.1987149541 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]

Gene co-expression network

sample Hb_003786_080 Hb_003786_080 Hb_000035_210 Hb_000035_210 Hb_003786_080--Hb_000035_210 Hb_001638_310 Hb_001638_310 Hb_003786_080--Hb_001638_310 Hb_000438_130 Hb_000438_130 Hb_003786_080--Hb_000438_130 Hb_000977_170 Hb_000977_170 Hb_003786_080--Hb_000977_170 Hb_006487_040 Hb_006487_040 Hb_003786_080--Hb_006487_040 Hb_000802_050 Hb_000802_050 Hb_003786_080--Hb_000802_050 Hb_000094_100 Hb_000094_100 Hb_000035_210--Hb_000094_100 Hb_000009_020 Hb_000009_020 Hb_000035_210--Hb_000009_020 Hb_000056_310 Hb_000056_310 Hb_000035_210--Hb_000056_310 Hb_001953_100 Hb_001953_100 Hb_000035_210--Hb_001953_100 Hb_002044_020 Hb_002044_020 Hb_000035_210--Hb_002044_020 Hb_004837_210 Hb_004837_210 Hb_000035_210--Hb_004837_210 Hb_003862_040 Hb_003862_040 Hb_001638_310--Hb_003862_040 Hb_000574_470 Hb_000574_470 Hb_001638_310--Hb_000574_470 Hb_001711_060 Hb_001711_060 Hb_001638_310--Hb_001711_060 Hb_001638_310--Hb_000094_100 Hb_172632_060 Hb_172632_060 Hb_001638_310--Hb_172632_060 Hb_001638_310--Hb_000056_310 Hb_001386_090 Hb_001386_090 Hb_000438_130--Hb_001386_090 Hb_000392_450 Hb_000392_450 Hb_000438_130--Hb_000392_450 Hb_000438_130--Hb_001711_060 Hb_002027_320 Hb_002027_320 Hb_000438_130--Hb_002027_320 Hb_012653_030 Hb_012653_030 Hb_000438_130--Hb_012653_030 Hb_003397_030 Hb_003397_030 Hb_000438_130--Hb_003397_030 Hb_119044_010 Hb_119044_010 Hb_000977_170--Hb_119044_010 Hb_000045_050 Hb_000045_050 Hb_000977_170--Hb_000045_050 Hb_058620_080 Hb_058620_080 Hb_000977_170--Hb_058620_080 Hb_003948_020 Hb_003948_020 Hb_000977_170--Hb_003948_020 Hb_000516_080 Hb_000516_080 Hb_000977_170--Hb_000516_080 Hb_005181_120 Hb_005181_120 Hb_000977_170--Hb_005181_120 Hb_003992_050 Hb_003992_050 Hb_006487_040--Hb_003992_050 Hb_027654_070 Hb_027654_070 Hb_006487_040--Hb_027654_070 Hb_002986_140 Hb_002986_140 Hb_006487_040--Hb_002986_140 Hb_002999_030 Hb_002999_030 Hb_006487_040--Hb_002999_030 Hb_006487_040--Hb_000035_210 Hb_001300_130 Hb_001300_130 Hb_000802_050--Hb_001300_130 Hb_006829_080 Hb_006829_080 Hb_000802_050--Hb_006829_080 Hb_003549_140 Hb_003549_140 Hb_000802_050--Hb_003549_140 Hb_002232_380 Hb_002232_380 Hb_000802_050--Hb_002232_380 Hb_000005_130 Hb_000005_130 Hb_000802_050--Hb_000005_130 Hb_000684_430 Hb_000684_430 Hb_000802_050--Hb_000684_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47518 0.637298 18.9265 3.68568 3.08367 2.12803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0141 0.615077 4.35705 0.383381 13.4784

CAGE analysis