Hb_003786_090

Information

Type -
Description -
Location Contig3786: 154998-155575
Sequence    

Annotation

kegg
ID cit:102621950
description uncharacterized LOC102621950
nr
ID KDP44332.1
description hypothetical protein JCGZ_19199 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19199 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38522: 154871-155462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003786_090 0.0 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
2 Hb_008790_050 0.1716950799 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000784_040 0.1916520458 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
4 Hb_001587_210 0.1941870185 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
5 Hb_000450_020 0.2016030566 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001741_130 0.2055474472 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
7 Hb_163268_010 0.205547601 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
8 Hb_000249_120 0.2061312152 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
9 Hb_008505_020 0.2063825741 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
10 Hb_033835_020 0.2064776482 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_005531_010 0.2072793634 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
12 Hb_000756_020 0.2088488296 - - BnaA05g19440D [Brassica napus]
13 Hb_002240_040 0.2122911238 - - -
14 Hb_091433_040 0.2148296867 - - PREDICTED: josephin-like protein [Jatropha curcas]
15 Hb_042223_010 0.2210057199 - - Protein Z, putative [Ricinus communis]
16 Hb_000227_200 0.2246170402 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
17 Hb_001348_230 0.2264479218 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
18 Hb_156473_010 0.2372420745 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
19 Hb_007426_050 0.2378564321 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
20 Hb_000068_030 0.2415740381 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]

Gene co-expression network

sample Hb_003786_090 Hb_003786_090 Hb_008790_050 Hb_008790_050 Hb_003786_090--Hb_008790_050 Hb_000784_040 Hb_000784_040 Hb_003786_090--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_003786_090--Hb_001587_210 Hb_000450_020 Hb_000450_020 Hb_003786_090--Hb_000450_020 Hb_001741_130 Hb_001741_130 Hb_003786_090--Hb_001741_130 Hb_163268_010 Hb_163268_010 Hb_003786_090--Hb_163268_010 Hb_002240_040 Hb_002240_040 Hb_008790_050--Hb_002240_040 Hb_039229_010 Hb_039229_010 Hb_008790_050--Hb_039229_010 Hb_005531_010 Hb_005531_010 Hb_008790_050--Hb_005531_010 Hb_033835_020 Hb_033835_020 Hb_008790_050--Hb_033835_020 Hb_008505_020 Hb_008505_020 Hb_008790_050--Hb_008505_020 Hb_000227_200 Hb_000227_200 Hb_000784_040--Hb_000227_200 Hb_091433_040 Hb_091433_040 Hb_000784_040--Hb_091433_040 Hb_000995_070 Hb_000995_070 Hb_000784_040--Hb_000995_070 Hb_042223_010 Hb_042223_010 Hb_000784_040--Hb_042223_010 Hb_005914_070 Hb_005914_070 Hb_000784_040--Hb_005914_070 Hb_003599_070 Hb_003599_070 Hb_000784_040--Hb_003599_070 Hb_001587_210--Hb_000227_200 Hb_001587_210--Hb_042223_010 Hb_001587_210--Hb_000784_040 Hb_001587_210--Hb_091433_040 Hb_001587_210--Hb_000450_020 Hb_001348_230 Hb_001348_230 Hb_000450_020--Hb_001348_230 Hb_000450_020--Hb_091433_040 Hb_001143_070 Hb_001143_070 Hb_000450_020--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_000450_020--Hb_000103_030 Hb_012053_040 Hb_012053_040 Hb_000450_020--Hb_012053_040 Hb_027346_020 Hb_027346_020 Hb_000450_020--Hb_027346_020 Hb_001741_130--Hb_163268_010 Hb_001741_130--Hb_008505_020 Hb_001741_130--Hb_033835_020 Hb_001741_130--Hb_005531_010 Hb_000756_020 Hb_000756_020 Hb_001741_130--Hb_000756_020 Hb_001741_130--Hb_002240_040 Hb_163268_010--Hb_008505_020 Hb_163268_010--Hb_033835_020 Hb_163268_010--Hb_005531_010 Hb_163268_010--Hb_000756_020 Hb_163268_010--Hb_002240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63831 0 0 0.110261 0.0521246 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6429 130.989 228.17 8.62606 0

CAGE analysis