Hb_003787_010

Information

Type -
Description -
Location Contig3787: 8881-11994
Sequence    

Annotation

kegg
ID pda:103703275
description 40S ribosomal protein S3-3-like
nr
ID XP_008784293.1
description PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
swissprot
ID Q9FJA6
description 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1
trembl
ID A0A0B2SB57
description 40S ribosomal protein S3-3 OS=Glycine soja GN=glysoja_035389 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s3-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38524: 9064-12062
cDNA
(Sanger)
(ID:Location)		 009_O09.ab1: 9070-11775 , 012_J22.ab1: 9064-11635 , 015_P23.ab1: 9066-11772 , 020_F21.ab1: 9070-11703 , 041_C17.ab1: 9070-11771

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003787_010 0.0 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
2 Hb_000217_030 0.0536740703 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
3 Hb_002995_020 0.0555254733 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
4 Hb_172426_040 0.058313673 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
5 Hb_005846_040 0.0591923103 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
6 Hb_000020_060 0.0633684729 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
7 Hb_015279_010 0.0645012735 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
8 Hb_004116_190 0.06538209 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
9 Hb_011671_100 0.0698677168 - - 60S ribosomal protein L15 [Populus trichocarpa]
10 Hb_009051_030 0.0710346693 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
11 Hb_003151_040 0.0714800338 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
12 Hb_000920_110 0.0749263176 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
13 Hb_000009_460 0.0760139261 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004767_080 0.0764835843 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
15 Hb_001616_040 0.0765036301 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
16 Hb_000331_470 0.0767381774 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
17 Hb_002061_040 0.0774691115 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
18 Hb_000417_360 0.0781456254 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
19 Hb_018124_010 0.0782496677 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
20 Hb_024071_020 0.0787393814 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]

Gene co-expression network

sample Hb_003787_010 Hb_003787_010 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_172426_040 Hb_172426_040 Hb_003787_010--Hb_172426_040 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_000020_060 Hb_000020_060 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_004116_190 Hb_004116_190 Hb_000217_030--Hb_004116_190 Hb_000217_030--Hb_002995_020 Hb_001691_140 Hb_001691_140 Hb_000217_030--Hb_001691_140 Hb_002518_080 Hb_002518_080 Hb_000217_030--Hb_002518_080 Hb_022425_040 Hb_022425_040 Hb_000217_030--Hb_022425_040 Hb_002995_020--Hb_004116_190 Hb_002995_020--Hb_000020_060 Hb_001633_050 Hb_001633_050 Hb_002995_020--Hb_001633_050 Hb_000656_240 Hb_000656_240 Hb_002995_020--Hb_000656_240 Hb_001123_130 Hb_001123_130 Hb_002995_020--Hb_001123_130 Hb_003918_010 Hb_003918_010 Hb_172426_040--Hb_003918_010 Hb_006059_050 Hb_006059_050 Hb_172426_040--Hb_006059_050 Hb_172426_040--Hb_000020_060 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_172426_040--Hb_004116_190 Hb_003151_040 Hb_003151_040 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_005846_040--Hb_004116_190 Hb_000020_060--Hb_004116_190 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_015279_010--Hb_022425_040 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_015279_010--Hb_004116_190 Hb_000920_110 Hb_000920_110 Hb_015279_010--Hb_000920_110 Hb_011671_100 Hb_011671_100 Hb_015279_010--Hb_011671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
337.357 264.523 254.668 315.531 239.545 312.558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
560.588 740.529 423.606 349.397 162.769

CAGE analysis