Hb_003787_020

Information

Type -
Description -
Location Contig3787: 14768-18582
Sequence    

Annotation

kegg
ID rcu:RCOM_1045930
description replication factor A 1, rfa1, putative
nr
ID XP_012077021.1
description PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
swissprot
ID Q9SKI4
description Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana GN=RPA1A PE=1 SV=1
trembl
ID B9RK18
description Replication factor A 1, rfa1, putative OS=Ricinus communis GN=RCOM_1045930 PE=4 SV=1
Gene Ontology
ID GO:0000790
description replication protein a 70 kda dna-binding subunit a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38526: 14744-18268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003787_020 0.0 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
2 Hb_006647_020 0.0830595409 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_000030_150 0.0901596271 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_002006_090 0.0947414788 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
5 Hb_061802_020 0.0968019289 - - zinc finger family protein [Populus trichocarpa]
6 Hb_007924_020 0.1026660658 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000614_230 0.1028936083 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
8 Hb_000059_220 0.1034609217 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
9 Hb_000920_240 0.1044804742 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
10 Hb_000123_120 0.1065997911 - - actin depolymerizing factor 4 [Hevea brasiliensis]
11 Hb_001329_300 0.1077448463 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
12 Hb_000840_210 0.1079534367 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
13 Hb_178968_110 0.1096962519 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
14 Hb_005431_010 0.1098676865 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
15 Hb_000297_200 0.1099021036 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
16 Hb_003376_120 0.1100306146 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
17 Hb_003408_030 0.1102156709 - - PREDICTED: protein YIF1B [Jatropha curcas]
18 Hb_055062_030 0.1103482316 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
19 Hb_001051_100 0.1105170334 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
20 Hb_000111_360 0.111131771 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003787_020 Hb_003787_020 Hb_006647_020 Hb_006647_020 Hb_003787_020--Hb_006647_020 Hb_000030_150 Hb_000030_150 Hb_003787_020--Hb_000030_150 Hb_002006_090 Hb_002006_090 Hb_003787_020--Hb_002006_090 Hb_061802_020 Hb_061802_020 Hb_003787_020--Hb_061802_020 Hb_007924_020 Hb_007924_020 Hb_003787_020--Hb_007924_020 Hb_000614_230 Hb_000614_230 Hb_003787_020--Hb_000614_230 Hb_006647_020--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_006647_020--Hb_000111_360 Hb_002056_060 Hb_002056_060 Hb_006647_020--Hb_002056_060 Hb_000116_010 Hb_000116_010 Hb_006647_020--Hb_000116_010 Hb_000406_120 Hb_000406_120 Hb_006647_020--Hb_000406_120 Hb_000030_150--Hb_061802_020 Hb_006949_040 Hb_006949_040 Hb_000030_150--Hb_006949_040 Hb_002909_070 Hb_002909_070 Hb_000030_150--Hb_002909_070 Hb_000920_240 Hb_000920_240 Hb_000030_150--Hb_000920_240 Hb_002890_280 Hb_002890_280 Hb_000030_150--Hb_002890_280 Hb_001329_300 Hb_001329_300 Hb_002006_090--Hb_001329_300 Hb_002006_090--Hb_000614_230 Hb_008695_210 Hb_008695_210 Hb_002006_090--Hb_008695_210 Hb_000001_140 Hb_000001_140 Hb_002006_090--Hb_000001_140 Hb_001085_170 Hb_001085_170 Hb_002006_090--Hb_001085_170 Hb_006915_050 Hb_006915_050 Hb_002006_090--Hb_006915_050 Hb_061802_020--Hb_006949_040 Hb_000049_120 Hb_000049_120 Hb_061802_020--Hb_000049_120 Hb_001195_690 Hb_001195_690 Hb_061802_020--Hb_001195_690 Hb_001671_020 Hb_001671_020 Hb_061802_020--Hb_001671_020 Hb_020178_070 Hb_020178_070 Hb_061802_020--Hb_020178_070 Hb_000622_040 Hb_000622_040 Hb_007924_020--Hb_000622_040 Hb_044662_070 Hb_044662_070 Hb_007924_020--Hb_044662_070 Hb_008289_060 Hb_008289_060 Hb_007924_020--Hb_008289_060 Hb_000429_170 Hb_000429_170 Hb_007924_020--Hb_000429_170 Hb_003408_030 Hb_003408_030 Hb_007924_020--Hb_003408_030 Hb_003376_120 Hb_003376_120 Hb_007924_020--Hb_003376_120 Hb_000614_230--Hb_008695_210 Hb_000567_260 Hb_000567_260 Hb_000614_230--Hb_000567_260 Hb_000614_230--Hb_001329_300 Hb_003266_130 Hb_003266_130 Hb_000614_230--Hb_003266_130 Hb_000614_230--Hb_001085_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4073 11.6829 5.96179 10.1804 14.1748 17.3952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.563 26.4702 46.7046 6.8592 5.44151

CAGE analysis