Hb_003787_030

Information

Type -
Description -
Location Contig3787: 19182-19550
Sequence    

Annotation

kegg
ID rcu:RCOM_1045940
description hypothetical protein
nr
ID XP_002514063.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q2JN82
description Photosystem II reaction center X protein OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=psbX PE=3 SV=1
trembl
ID B9RK19
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1
Gene Ontology
ID GO:0009523
description membrane family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38527: 18839-19686
cDNA
(Sanger)
(ID:Location)		 002_K20.ab1: 19016-19675 , 006_E03.ab1: 18983-19671 , 010_K21.ab1: 18909-19649 , 010_L09.ab1: 19016-19604 , 013_P09.ab1: 19095-19687 , 016_I02.ab1: 19079-19302 , 029_H19.ab1: 19088-19672 , 031_O23.ab1: 19016-19649 , 034_B12.ab1: 18907-19611 , 038_G05.ab1: 19030-19611 , 043_D06.ab1: 19016-19611 , 046_H10.ab1: 19014-19649 , 048_M14.ab1: 19014-19649 , 051_L11.ab1: 19088-19611

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003787_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002301_070 0.0290673514 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000928_260 0.0343136341 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
4 Hb_006573_240 0.0500712537 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
5 Hb_010697_020 0.0550350805 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000815_120 0.0586933773 - - calcium ion binding protein, putative [Ricinus communis]
7 Hb_004143_080 0.0630414579 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
8 Hb_002329_050 0.0650939892 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003033_020 0.0663644911 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
10 Hb_000268_050 0.0703707516 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
11 Hb_000883_080 0.0707207123 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_127349_020 0.0732370142 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_000140_040 0.0735260679 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
14 Hb_180094_010 0.0736967281 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
15 Hb_046825_010 0.0739779343 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
16 Hb_154064_010 0.0772971573 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
17 Hb_029622_060 0.0774119588 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
18 Hb_006718_030 0.0799409438 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
19 Hb_000307_100 0.0803091502 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
20 Hb_000152_300 0.0817015637 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003787_030 Hb_003787_030 Hb_002301_070 Hb_002301_070 Hb_003787_030--Hb_002301_070 Hb_000928_260 Hb_000928_260 Hb_003787_030--Hb_000928_260 Hb_006573_240 Hb_006573_240 Hb_003787_030--Hb_006573_240 Hb_010697_020 Hb_010697_020 Hb_003787_030--Hb_010697_020 Hb_000815_120 Hb_000815_120 Hb_003787_030--Hb_000815_120 Hb_004143_080 Hb_004143_080 Hb_003787_030--Hb_004143_080 Hb_002301_070--Hb_000928_260 Hb_002301_070--Hb_010697_020 Hb_002301_070--Hb_004143_080 Hb_002301_070--Hb_000815_120 Hb_002301_070--Hb_006573_240 Hb_000928_260--Hb_006573_240 Hb_000928_260--Hb_010697_020 Hb_000883_080 Hb_000883_080 Hb_000928_260--Hb_000883_080 Hb_000928_260--Hb_004143_080 Hb_003033_020 Hb_003033_020 Hb_006573_240--Hb_003033_020 Hb_002329_050 Hb_002329_050 Hb_006573_240--Hb_002329_050 Hb_000307_100 Hb_000307_100 Hb_006573_240--Hb_000307_100 Hb_001348_160 Hb_001348_160 Hb_010697_020--Hb_001348_160 Hb_001191_060 Hb_001191_060 Hb_010697_020--Hb_001191_060 Hb_001269_480 Hb_001269_480 Hb_010697_020--Hb_001269_480 Hb_000815_120--Hb_004143_080 Hb_004818_010 Hb_004818_010 Hb_000815_120--Hb_004818_010 Hb_000704_020 Hb_000704_020 Hb_000815_120--Hb_000704_020 Hb_001951_050 Hb_001951_050 Hb_000815_120--Hb_001951_050 Hb_003093_050 Hb_003093_050 Hb_000815_120--Hb_003093_050 Hb_004143_080--Hb_004818_010 Hb_004143_080--Hb_003093_050 Hb_004143_080--Hb_000704_020 Hb_004143_080--Hb_001951_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 15.0978 335.885 399.362 0 0.352736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40337 1.10256 0.858689 4.65187 1483.19

CAGE analysis