Hb_003787_060

Information

Type -
Description -
Location Contig3787: 46911-49411
Sequence    

Annotation

kegg
ID rcu:RCOM_1045970
description hypothetical protein
nr
ID XP_012077019.1
description PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
swissprot
ID Q9LPG3
description Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1
trembl
ID A0A067KCM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07463 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38528: 48270-49538
cDNA
(Sanger)
(ID:Location)		 006_D21.ab1: 48818-49538

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003787_060 0.0 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
2 Hb_003805_080 0.058077985 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
3 Hb_039496_010 0.0637923588 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
4 Hb_188923_010 0.0828528391 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
5 Hb_000963_010 0.0856984903 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
6 Hb_000934_290 0.090332263 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003734_120 0.1018111835 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
8 Hb_000276_030 0.1037776997 - - dimethylaniline monooxygenase, putative [Ricinus communis]
9 Hb_150084_010 0.1086029457 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
10 Hb_001158_080 0.1096887834 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
11 Hb_184942_010 0.1120507465 - - STS14 protein precursor, putative [Ricinus communis]
12 Hb_028008_030 0.1149053997 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
13 Hb_003788_010 0.1176266001 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
14 Hb_001863_080 0.1182331507 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
15 Hb_000172_740 0.1232015419 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
16 Hb_002333_010 0.1240535725 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
17 Hb_001470_040 0.1284172126 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
18 Hb_000230_160 0.1287853754 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
19 Hb_012807_140 0.1303941294 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
20 Hb_000967_010 0.1310485582 - - hypothetical protein JCGZ_08336 [Jatropha curcas]

Gene co-expression network

sample Hb_003787_060 Hb_003787_060 Hb_003805_080 Hb_003805_080 Hb_003787_060--Hb_003805_080 Hb_039496_010 Hb_039496_010 Hb_003787_060--Hb_039496_010 Hb_188923_010 Hb_188923_010 Hb_003787_060--Hb_188923_010 Hb_000963_010 Hb_000963_010 Hb_003787_060--Hb_000963_010 Hb_000934_290 Hb_000934_290 Hb_003787_060--Hb_000934_290 Hb_003734_120 Hb_003734_120 Hb_003787_060--Hb_003734_120 Hb_028008_030 Hb_028008_030 Hb_003805_080--Hb_028008_030 Hb_003805_080--Hb_039496_010 Hb_003805_080--Hb_188923_010 Hb_000230_160 Hb_000230_160 Hb_003805_080--Hb_000230_160 Hb_003058_180 Hb_003058_180 Hb_003805_080--Hb_003058_180 Hb_039496_010--Hb_000934_290 Hb_039496_010--Hb_000963_010 Hb_039496_010--Hb_028008_030 Hb_003788_010 Hb_003788_010 Hb_039496_010--Hb_003788_010 Hb_000967_010 Hb_000967_010 Hb_188923_010--Hb_000967_010 Hb_188923_010--Hb_003058_180 Hb_001863_080 Hb_001863_080 Hb_188923_010--Hb_001863_080 Hb_118707_020 Hb_118707_020 Hb_188923_010--Hb_118707_020 Hb_150084_010 Hb_150084_010 Hb_000963_010--Hb_150084_010 Hb_002333_010 Hb_002333_010 Hb_000963_010--Hb_002333_010 Hb_184942_010 Hb_184942_010 Hb_000963_010--Hb_184942_010 Hb_012787_050 Hb_012787_050 Hb_000963_010--Hb_012787_050 Hb_008140_060 Hb_008140_060 Hb_000934_290--Hb_008140_060 Hb_000934_290--Hb_003788_010 Hb_001158_080 Hb_001158_080 Hb_000934_290--Hb_001158_080 Hb_094637_010 Hb_094637_010 Hb_000934_290--Hb_094637_010 Hb_000276_030 Hb_000276_030 Hb_003734_120--Hb_000276_030 Hb_003734_120--Hb_188923_010 Hb_018133_110 Hb_018133_110 Hb_003734_120--Hb_018133_110 Hb_007313_010 Hb_007313_010 Hb_003734_120--Hb_007313_010 Hb_002042_200 Hb_002042_200 Hb_003734_120--Hb_002042_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.792931 0.224278 1.23751 0 0.016314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.3991 0.246966

CAGE analysis