Hb_003788_010

Information

Type -
Description -
Location Contig3788: 29070-32478
Sequence    

Annotation

kegg
ID rcu:RCOM_1172150
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012088210.1
description PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
swissprot
ID Q9SGP2
description Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1
trembl
ID A0A067JML5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25735 PE=3 SV=1
Gene Ontology
ID GO:0005622
description receptor-like protein kinase hsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38529: 29309-32451
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003788_010 0.0 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
2 Hb_000934_290 0.0808764571 - - conserved hypothetical protein [Ricinus communis]
3 Hb_130967_010 0.0886635263 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_039496_010 0.0996298087 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
5 Hb_000335_050 0.1033537227 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
6 Hb_009581_050 0.1055475613 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
7 Hb_012807_060 0.1083989567 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000407_080 0.1118731111 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
9 Hb_000963_010 0.1157023531 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
10 Hb_002551_090 0.1160197451 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
11 Hb_001421_010 0.1160969634 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
12 Hb_003807_020 0.1161106295 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
13 Hb_010926_010 0.1174021097 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
14 Hb_007123_020 0.1175338397 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
15 Hb_003787_060 0.1176266001 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
16 Hb_001158_080 0.1196800143 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
17 Hb_134017_010 0.1206711157 - - kinase, putative [Ricinus communis]
18 Hb_003052_120 0.1212320681 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
19 Hb_008140_060 0.1214511162 - - Cytochrome P450, putative [Theobroma cacao]
20 Hb_000236_050 0.121548851 - - phosphate transporter [Manihot esculenta]

Gene co-expression network

sample Hb_003788_010 Hb_003788_010 Hb_000934_290 Hb_000934_290 Hb_003788_010--Hb_000934_290 Hb_130967_010 Hb_130967_010 Hb_003788_010--Hb_130967_010 Hb_039496_010 Hb_039496_010 Hb_003788_010--Hb_039496_010 Hb_000335_050 Hb_000335_050 Hb_003788_010--Hb_000335_050 Hb_009581_050 Hb_009581_050 Hb_003788_010--Hb_009581_050 Hb_012807_060 Hb_012807_060 Hb_003788_010--Hb_012807_060 Hb_008140_060 Hb_008140_060 Hb_000934_290--Hb_008140_060 Hb_000934_290--Hb_039496_010 Hb_001158_080 Hb_001158_080 Hb_000934_290--Hb_001158_080 Hb_003787_060 Hb_003787_060 Hb_000934_290--Hb_003787_060 Hb_094637_010 Hb_094637_010 Hb_000934_290--Hb_094637_010 Hb_134017_010 Hb_134017_010 Hb_130967_010--Hb_134017_010 Hb_006364_020 Hb_006364_020 Hb_130967_010--Hb_006364_020 Hb_000586_100 Hb_000586_100 Hb_130967_010--Hb_000586_100 Hb_003439_090 Hb_003439_090 Hb_130967_010--Hb_003439_090 Hb_002970_070 Hb_002970_070 Hb_130967_010--Hb_002970_070 Hb_039496_010--Hb_003787_060 Hb_003805_080 Hb_003805_080 Hb_039496_010--Hb_003805_080 Hb_000963_010 Hb_000963_010 Hb_039496_010--Hb_000963_010 Hb_028008_030 Hb_028008_030 Hb_039496_010--Hb_028008_030 Hb_003807_020 Hb_003807_020 Hb_000335_050--Hb_003807_020 Hb_010926_010 Hb_010926_010 Hb_000335_050--Hb_010926_010 Hb_000335_050--Hb_009581_050 Hb_002391_350 Hb_002391_350 Hb_000335_050--Hb_002391_350 Hb_000579_180 Hb_000579_180 Hb_000335_050--Hb_000579_180 Hb_004447_020 Hb_004447_020 Hb_000335_050--Hb_004447_020 Hb_000407_080 Hb_000407_080 Hb_009581_050--Hb_000407_080 Hb_009581_050--Hb_012807_060 Hb_002007_140 Hb_002007_140 Hb_009581_050--Hb_002007_140 Hb_009581_050--Hb_003807_020 Hb_003430_020 Hb_003430_020 Hb_009581_050--Hb_003430_020 Hb_003052_120 Hb_003052_120 Hb_012807_060--Hb_003052_120 Hb_002551_090 Hb_002551_090 Hb_012807_060--Hb_002551_090 Hb_012807_060--Hb_000579_180 Hb_012807_060--Hb_003430_020 Hb_008226_120 Hb_008226_120 Hb_012807_060--Hb_008226_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.059181 7.41117 2.22203 6.89506 0 0.135139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0262093 0.0103126 0 12.4032 2.09377

CAGE analysis