Hb_003788_030

Information

Type transcription factor
Description TF Family: NAC
Location Contig3788: 45052-46477
Sequence    

Annotation

kegg
ID rcu:RCOM_1172140
description transcription factor, putative
nr
ID XP_002517849.1
description transcription factor, putative [Ricinus communis]
swissprot
ID O49459
description NAC domain-containing protein 73 OS=Arabidopsis thaliana GN=NAC073 PE=2 SV=1
trembl
ID B9RVT0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1172140 PE=4 SV=1
Gene Ontology
ID GO:0005634
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003788_030 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_002785_020 0.0543401947 - - PREDICTED: laccase-4-like [Jatropha curcas]
3 Hb_001935_200 0.060015785 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
4 Hb_000684_190 0.0699629713 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
5 Hb_000422_090 0.0732323129 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000696_130 0.0735127478 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_002636_170 0.0790636647 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
8 Hb_009767_040 0.0833439872 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
9 Hb_000581_010 0.0840566438 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
10 Hb_000645_230 0.0872176371 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
11 Hb_000487_350 0.0878315494 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002031_020 0.0896714132 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
13 Hb_188281_020 0.0899109542 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
14 Hb_003645_040 0.0901050091 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
15 Hb_002660_180 0.0938026626 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002734_020 0.094463643 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
17 Hb_000193_130 0.0974610724 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000521_030 0.0997175911 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
19 Hb_000594_010 0.1015738276 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
20 Hb_011912_010 0.1021680429 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003788_030 Hb_003788_030 Hb_002785_020 Hb_002785_020 Hb_003788_030--Hb_002785_020 Hb_001935_200 Hb_001935_200 Hb_003788_030--Hb_001935_200 Hb_000684_190 Hb_000684_190 Hb_003788_030--Hb_000684_190 Hb_000422_090 Hb_000422_090 Hb_003788_030--Hb_000422_090 Hb_000696_130 Hb_000696_130 Hb_003788_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_003788_030--Hb_002636_170 Hb_002785_020--Hb_000684_190 Hb_000645_230 Hb_000645_230 Hb_002785_020--Hb_000645_230 Hb_002734_020 Hb_002734_020 Hb_002785_020--Hb_002734_020 Hb_002785_020--Hb_001935_200 Hb_002785_020--Hb_000422_090 Hb_001935_200--Hb_000684_190 Hb_001935_200--Hb_000645_230 Hb_001935_200--Hb_000422_090 Hb_155215_030 Hb_155215_030 Hb_001935_200--Hb_155215_030 Hb_000684_190--Hb_000645_230 Hb_000684_190--Hb_000422_090 Hb_004884_040 Hb_004884_040 Hb_000684_190--Hb_004884_040 Hb_000684_190--Hb_002734_020 Hb_000422_090--Hb_002636_170 Hb_000422_090--Hb_000696_130 Hb_002660_180 Hb_002660_180 Hb_000422_090--Hb_002660_180 Hb_000422_090--Hb_002734_020 Hb_001856_250 Hb_001856_250 Hb_000422_090--Hb_001856_250 Hb_000696_130--Hb_002636_170 Hb_000696_130--Hb_002660_180 Hb_000037_150 Hb_000037_150 Hb_000696_130--Hb_000037_150 Hb_024074_030 Hb_024074_030 Hb_000696_130--Hb_024074_030 Hb_019953_010 Hb_019953_010 Hb_000696_130--Hb_019953_010 Hb_002636_170--Hb_002660_180 Hb_002636_170--Hb_019953_010 Hb_002636_170--Hb_000037_150 Hb_002636_170--Hb_024074_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0522021 0.992353 0.403624 40.1965 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.190207 10.8769

CAGE analysis