Hb_003788_040

Information

Type -
Description -
Location Contig3788: 60111-63839
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003788_040 0.0 - - -
2 Hb_001437_300 0.1146873953 - - -
3 Hb_000590_090 0.1203096784 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_000680_150 0.1319908854 - - PREDICTED: protein STU1-like [Jatropha curcas]
5 Hb_017098_030 0.1423851325 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
6 Hb_002875_090 0.1432831634 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_002619_010 0.1455651631 - - -
8 Hb_002681_040 0.1456304813 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
9 Hb_005714_040 0.1494477199 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002043_180 0.1498712304 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
11 Hb_001386_130 0.1499969887 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
12 Hb_000183_070 0.151857115 - - -
13 Hb_004374_010 0.151915977 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
14 Hb_006452_190 0.1539181403 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
15 Hb_005389_140 0.154060392 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
16 Hb_001623_370 0.1585620592 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003055_050 0.1597773439 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
18 Hb_000714_020 0.1602705398 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
19 Hb_002226_030 0.1612704941 - - PREDICTED: high affinity nitrate transporter 2.7 [Jatropha curcas]
20 Hb_004813_010 0.1614131028 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003788_040 Hb_003788_040 Hb_001437_300 Hb_001437_300 Hb_003788_040--Hb_001437_300 Hb_000590_090 Hb_000590_090 Hb_003788_040--Hb_000590_090 Hb_000680_150 Hb_000680_150 Hb_003788_040--Hb_000680_150 Hb_017098_030 Hb_017098_030 Hb_003788_040--Hb_017098_030 Hb_002875_090 Hb_002875_090 Hb_003788_040--Hb_002875_090 Hb_002619_010 Hb_002619_010 Hb_003788_040--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_001437_300--Hb_004374_010 Hb_001437_300--Hb_017098_030 Hb_000183_070 Hb_000183_070 Hb_001437_300--Hb_000183_070 Hb_006501_150 Hb_006501_150 Hb_001437_300--Hb_006501_150 Hb_007992_030 Hb_007992_030 Hb_001437_300--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_001437_300--Hb_001514_020 Hb_005389_140 Hb_005389_140 Hb_000590_090--Hb_005389_140 Hb_001386_130 Hb_001386_130 Hb_000590_090--Hb_001386_130 Hb_000590_090--Hb_000680_150 Hb_000714_020 Hb_000714_020 Hb_000590_090--Hb_000714_020 Hb_001454_390 Hb_001454_390 Hb_000590_090--Hb_001454_390 Hb_005714_040 Hb_005714_040 Hb_000590_090--Hb_005714_040 Hb_000680_150--Hb_001386_130 Hb_007451_030 Hb_007451_030 Hb_000680_150--Hb_007451_030 Hb_002681_040 Hb_002681_040 Hb_000680_150--Hb_002681_040 Hb_000680_150--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_000680_150--Hb_001493_100 Hb_017098_030--Hb_004374_010 Hb_003055_050 Hb_003055_050 Hb_017098_030--Hb_003055_050 Hb_006261_040 Hb_006261_040 Hb_017098_030--Hb_006261_040 Hb_002851_060 Hb_002851_060 Hb_017098_030--Hb_002851_060 Hb_004502_030 Hb_004502_030 Hb_017098_030--Hb_004502_030 Hb_003636_090 Hb_003636_090 Hb_002875_090--Hb_003636_090 Hb_000352_150 Hb_000352_150 Hb_002875_090--Hb_000352_150 Hb_001780_060 Hb_001780_060 Hb_002875_090--Hb_001780_060 Hb_002875_090--Hb_001454_390 Hb_170116_010 Hb_170116_010 Hb_002875_090--Hb_170116_010 Hb_003304_080 Hb_003304_080 Hb_002875_090--Hb_003304_080 Hb_002619_010--Hb_000714_020 Hb_004137_030 Hb_004137_030 Hb_002619_010--Hb_004137_030 Hb_073973_170 Hb_073973_170 Hb_002619_010--Hb_073973_170 Hb_002619_010--Hb_004374_010 Hb_005741_020 Hb_005741_020 Hb_002619_010--Hb_005741_020 Hb_002619_010--Hb_000590_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.678022 0.0492609 0.0468826 0.0247864 0.366028 0.25307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.337992 0.318915 0.0961361 0.021515 0.106684

CAGE analysis