Hb_003788_060

Information

Type -
Description -
Location Contig3788: 80314-92310
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21160g
description POPTRDRAFT_559348; VQ motif-containing family protein
nr
ID XP_010999806.1
description PREDICTED: protein MKS1-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H7P8
description VQ motif-containing family protein OS=Populus trichocarpa GN=POPTR_0005s21160g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003788_060 0.0 - - PREDICTED: protein MKS1-like [Populus euphratica]
2 Hb_012654_030 0.2694627037 - - conserved hypothetical protein [Ricinus communis]
3 Hb_125935_010 0.300594838 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
4 Hb_000758_040 0.3284533098 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
5 Hb_113250_010 0.3403075319 - - -
6 Hb_005389_130 0.3407362956 - - hypothetical protein CICLE_v10009852mg [Citrus clementina]
7 Hb_001994_010 0.3482997846 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_003636_070 0.363641813 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000002_450 0.3665351913 - - hypothetical protein JCGZ_02285 [Jatropha curcas]
10 Hb_000496_090 0.368801037 - - PREDICTED: inhibitor of trypsin and hageman factor-like [Gossypium raimondii]
11 Hb_001369_280 0.3730339468 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like isoform X3 [Solanum tuberosum]
12 Hb_000816_120 0.3739353917 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
13 Hb_003038_170 0.37529338 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000594_170 0.3768465441 - - -
15 Hb_001268_130 0.377471175 - - hypothetical protein JCGZ_26837 [Jatropha curcas]
16 Hb_006355_030 0.3793279678 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
17 Hb_036790_010 0.3805073331 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
18 Hb_007520_040 0.3887807528 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
19 Hb_000445_450 0.3908568959 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
20 Hb_000032_580 0.3949801181 - - hypothetical protein RCOM_1311780 [Ricinus communis]

Gene co-expression network

sample Hb_003788_060 Hb_003788_060 Hb_012654_030 Hb_012654_030 Hb_003788_060--Hb_012654_030 Hb_125935_010 Hb_125935_010 Hb_003788_060--Hb_125935_010 Hb_000758_040 Hb_000758_040 Hb_003788_060--Hb_000758_040 Hb_113250_010 Hb_113250_010 Hb_003788_060--Hb_113250_010 Hb_005389_130 Hb_005389_130 Hb_003788_060--Hb_005389_130 Hb_001994_010 Hb_001994_010 Hb_003788_060--Hb_001994_010 Hb_012654_030--Hb_005389_130 Hb_012654_030--Hb_001994_010 Hb_013394_020 Hb_013394_020 Hb_012654_030--Hb_013394_020 Hb_007809_070 Hb_007809_070 Hb_012654_030--Hb_007809_070 Hb_022790_030 Hb_022790_030 Hb_012654_030--Hb_022790_030 Hb_036790_010 Hb_036790_010 Hb_125935_010--Hb_036790_010 Hb_001369_280 Hb_001369_280 Hb_125935_010--Hb_001369_280 Hb_000496_090 Hb_000496_090 Hb_125935_010--Hb_000496_090 Hb_022137_030 Hb_022137_030 Hb_125935_010--Hb_022137_030 Hb_002740_020 Hb_002740_020 Hb_125935_010--Hb_002740_020 Hb_000816_120 Hb_000816_120 Hb_000758_040--Hb_000816_120 Hb_000758_040--Hb_113250_010 Hb_001190_060 Hb_001190_060 Hb_000758_040--Hb_001190_060 Hb_000011_430 Hb_000011_430 Hb_000758_040--Hb_000011_430 Hb_003096_050 Hb_003096_050 Hb_000758_040--Hb_003096_050 Hb_000975_150 Hb_000975_150 Hb_000758_040--Hb_000975_150 Hb_012754_040 Hb_012754_040 Hb_113250_010--Hb_012754_040 Hb_113250_010--Hb_000816_120 Hb_000645_110 Hb_000645_110 Hb_113250_010--Hb_000645_110 Hb_113250_010--Hb_001190_060 Hb_003636_070 Hb_003636_070 Hb_113250_010--Hb_003636_070 Hb_005389_130--Hb_001994_010 Hb_074683_010 Hb_074683_010 Hb_005389_130--Hb_074683_010 Hb_002027_370 Hb_002027_370 Hb_005389_130--Hb_002027_370 Hb_017214_050 Hb_017214_050 Hb_005389_130--Hb_017214_050 Hb_015836_010 Hb_015836_010 Hb_005389_130--Hb_015836_010 Hb_001994_010--Hb_074683_010 Hb_001994_010--Hb_002027_370 Hb_001994_010--Hb_017214_050 Hb_001994_010--Hb_015836_010 Hb_033594_010 Hb_033594_010 Hb_001994_010--Hb_033594_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0269201 0 0 0 0.0252447 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0486325 0 0.137492 0

CAGE analysis