Hb_003792_010

Information

Type -
Description -
Location Contig3792: 9507-10892
Sequence    

Annotation

kegg
ID rcu:RCOM_1037480
description hypothetical protein
nr
ID XP_002513975.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJQ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1037480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003792_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002254_020 0.0017484117 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
3 Hb_001377_140 0.0042197418 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
4 Hb_102933_010 0.005484145 - - Pectate lyase precursor, putative [Ricinus communis]
5 Hb_000152_690 0.010654638 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
6 Hb_003531_110 0.0132538675 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_010543_010 0.0134062162 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
8 Hb_001946_090 0.0144491083 - - -
9 Hb_000140_010 0.014593026 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_005065_090 0.0195142584 - - zinc/iron transporter, putative [Ricinus communis]
11 Hb_000760_090 0.0197555092 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
12 Hb_009225_030 0.0206452966 - - ring finger protein, putative [Ricinus communis]
13 Hb_104011_010 0.0212672656 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
14 Hb_185246_010 0.0231666318 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
15 Hb_001488_170 0.0232075907 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
16 Hb_121058_010 0.0232221033 - - ATP binding protein, putative [Ricinus communis]
17 Hb_001456_010 0.0248858981 - - o-methyltransferase, putative [Ricinus communis]
18 Hb_001645_080 0.0252054567 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
19 Hb_005663_020 0.0257338628 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
20 Hb_001504_250 0.0262819168 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_003792_010 Hb_003792_010 Hb_002254_020 Hb_002254_020 Hb_003792_010--Hb_002254_020 Hb_001377_140 Hb_001377_140 Hb_003792_010--Hb_001377_140 Hb_102933_010 Hb_102933_010 Hb_003792_010--Hb_102933_010 Hb_000152_690 Hb_000152_690 Hb_003792_010--Hb_000152_690 Hb_003531_110 Hb_003531_110 Hb_003792_010--Hb_003531_110 Hb_010543_010 Hb_010543_010 Hb_003792_010--Hb_010543_010 Hb_002254_020--Hb_001377_140 Hb_002254_020--Hb_102933_010 Hb_002254_020--Hb_003531_110 Hb_002254_020--Hb_000152_690 Hb_000140_010 Hb_000140_010 Hb_002254_020--Hb_000140_010 Hb_001377_140--Hb_003531_110 Hb_001377_140--Hb_102933_010 Hb_001377_140--Hb_000140_010 Hb_001377_140--Hb_000152_690 Hb_102933_010--Hb_000152_690 Hb_102933_010--Hb_010543_010 Hb_001946_090 Hb_001946_090 Hb_102933_010--Hb_001946_090 Hb_000152_690--Hb_010543_010 Hb_000152_690--Hb_001946_090 Hb_005065_090 Hb_005065_090 Hb_000152_690--Hb_005065_090 Hb_000760_090 Hb_000760_090 Hb_000152_690--Hb_000760_090 Hb_003531_110--Hb_000140_010 Hb_009225_030 Hb_009225_030 Hb_003531_110--Hb_009225_030 Hb_104011_010 Hb_104011_010 Hb_003531_110--Hb_104011_010 Hb_185246_010 Hb_185246_010 Hb_003531_110--Hb_185246_010 Hb_121058_010 Hb_121058_010 Hb_003531_110--Hb_121058_010 Hb_010543_010--Hb_001946_090 Hb_010543_010--Hb_005065_090 Hb_010543_010--Hb_000760_090 Hb_001488_170 Hb_001488_170 Hb_010543_010--Hb_001488_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.102151 0.0961108 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis