Hb_003794_010

Information

Type -
Description -
Location Contig3794: 38503-40050
Sequence    

Annotation

kegg
ID rcu:RCOM_1375730
description hypothetical protein
nr
ID XP_012080849.1
description PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LMA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18781 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38534: 38377-40197 , PASA_asmbl_38535: 38392-38735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003794_010 0.0 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
2 Hb_000160_210 0.0625298397 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000009_090 0.068574011 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
4 Hb_007007_060 0.0794208759 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
5 Hb_001390_110 0.0832813322 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
6 Hb_007904_120 0.0844362555 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
7 Hb_002909_050 0.0850602529 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001936_060 0.0856870836 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
9 Hb_030736_100 0.0864330685 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003939_050 0.0868811615 - - protein with unknown function [Ricinus communis]
11 Hb_002022_060 0.0871798762 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
12 Hb_023480_010 0.0886628987 - - cellular nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000390_180 0.0897883046 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
14 Hb_008695_020 0.0901691483 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
15 Hb_000665_160 0.0909293034 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
16 Hb_000498_010 0.0923213162 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000345_170 0.0940300224 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
18 Hb_000794_050 0.0948588325 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
19 Hb_003929_110 0.0955384855 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_023386_020 0.0976875299 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003794_010 Hb_003794_010 Hb_000160_210 Hb_000160_210 Hb_003794_010--Hb_000160_210 Hb_000009_090 Hb_000009_090 Hb_003794_010--Hb_000009_090 Hb_007007_060 Hb_007007_060 Hb_003794_010--Hb_007007_060 Hb_001390_110 Hb_001390_110 Hb_003794_010--Hb_001390_110 Hb_007904_120 Hb_007904_120 Hb_003794_010--Hb_007904_120 Hb_002909_050 Hb_002909_050 Hb_003794_010--Hb_002909_050 Hb_000160_210--Hb_007007_060 Hb_004100_080 Hb_004100_080 Hb_000160_210--Hb_004100_080 Hb_023386_020 Hb_023386_020 Hb_000160_210--Hb_023386_020 Hb_000160_210--Hb_000009_090 Hb_079526_030 Hb_079526_030 Hb_000160_210--Hb_079526_030 Hb_005993_050 Hb_005993_050 Hb_000009_090--Hb_005993_050 Hb_000009_090--Hb_007007_060 Hb_000853_230 Hb_000853_230 Hb_000009_090--Hb_000853_230 Hb_005054_230 Hb_005054_230 Hb_000009_090--Hb_005054_230 Hb_008695_020 Hb_008695_020 Hb_007007_060--Hb_008695_020 Hb_000260_100 Hb_000260_100 Hb_007007_060--Hb_000260_100 Hb_006960_050 Hb_006960_050 Hb_007007_060--Hb_006960_050 Hb_004055_150 Hb_004055_150 Hb_007007_060--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_007007_060--Hb_033720_010 Hb_001936_060 Hb_001936_060 Hb_001390_110--Hb_001936_060 Hb_008406_110 Hb_008406_110 Hb_001390_110--Hb_008406_110 Hb_000390_180 Hb_000390_180 Hb_001390_110--Hb_000390_180 Hb_001390_110--Hb_000853_230 Hb_000926_190 Hb_000926_190 Hb_001390_110--Hb_000926_190 Hb_000794_050 Hb_000794_050 Hb_001390_110--Hb_000794_050 Hb_001085_250 Hb_001085_250 Hb_007904_120--Hb_001085_250 Hb_001377_320 Hb_001377_320 Hb_007904_120--Hb_001377_320 Hb_007262_020 Hb_007262_020 Hb_007904_120--Hb_007262_020 Hb_007904_120--Hb_007007_060 Hb_012098_110 Hb_012098_110 Hb_007904_120--Hb_012098_110 Hb_002022_060 Hb_002022_060 Hb_007904_120--Hb_002022_060 Hb_000076_130 Hb_000076_130 Hb_002909_050--Hb_000076_130 Hb_010710_080 Hb_010710_080 Hb_002909_050--Hb_010710_080 Hb_000665_160 Hb_000665_160 Hb_002909_050--Hb_000665_160 Hb_000544_010 Hb_000544_010 Hb_002909_050--Hb_000544_010 Hb_001599_030 Hb_001599_030 Hb_002909_050--Hb_001599_030 Hb_006915_070 Hb_006915_070 Hb_002909_050--Hb_006915_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4206 7.1494 8.14667 3.72431 10.4277 11.9984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4213 7.22732 7.62199 7.40291 11.367

CAGE analysis