Hb_003799_060

Information

Type -
Description -
Location Contig3799: 115099-121337
Sequence    

Annotation

kegg
ID pop:POPTR_0005s22800g
description POPTRDRAFT_761175; hypothetical protein
nr
ID XP_002307567.2
description hypothetical protein POPTR_0005s22800g [Populus trichocarpa]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID B9H853
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22800g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003799_060 0.0 - - hypothetical protein POPTR_0005s22800g [Populus trichocarpa]
2 Hb_003858_060 0.1552453962 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
3 Hb_092029_010 0.15874483 - - Disease resistance protein RPM1, putative [Ricinus communis]
4 Hb_002983_090 0.1598865753 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
5 Hb_002876_280 0.165383784 - - hypothetical protein RCOM_0686540 [Ricinus communis]
6 Hb_028872_100 0.1695886251 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
7 Hb_000237_160 0.1700949873 - - BEL1-like homeodomain protein 1 [Morus notabilis]
8 Hb_094437_020 0.1706100637 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
9 Hb_038833_010 0.1741750095 - - polyprotein [Ananas comosus]
10 Hb_008461_070 0.1770647471 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
11 Hb_018272_050 0.1802036601 - - hypothetical protein VITISV_037409 [Vitis vinifera]
12 Hb_001866_090 0.1811597186 - - hypothetical protein VITISV_023491 [Vitis vinifera]
13 Hb_158534_010 0.1820328315 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
14 Hb_005305_030 0.1835960222 - - hypothetical protein JCGZ_25922 [Jatropha curcas]
15 Hb_002631_110 0.1838824983 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
16 Hb_004204_220 0.1845473403 - - -
17 Hb_188075_010 0.1882206883 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
18 Hb_006355_070 0.1885597961 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
19 Hb_001629_050 0.1929244093 - - structural constituent of cell wall, putative [Ricinus communis]
20 Hb_006351_120 0.1938587516 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]

Gene co-expression network

sample Hb_003799_060 Hb_003799_060 Hb_003858_060 Hb_003858_060 Hb_003799_060--Hb_003858_060 Hb_092029_010 Hb_092029_010 Hb_003799_060--Hb_092029_010 Hb_002983_090 Hb_002983_090 Hb_003799_060--Hb_002983_090 Hb_002876_280 Hb_002876_280 Hb_003799_060--Hb_002876_280 Hb_028872_100 Hb_028872_100 Hb_003799_060--Hb_028872_100 Hb_000237_160 Hb_000237_160 Hb_003799_060--Hb_000237_160 Hb_004204_220 Hb_004204_220 Hb_003858_060--Hb_004204_220 Hb_000834_100 Hb_000834_100 Hb_003858_060--Hb_000834_100 Hb_003858_060--Hb_002876_280 Hb_000856_210 Hb_000856_210 Hb_003858_060--Hb_000856_210 Hb_094437_020 Hb_094437_020 Hb_003858_060--Hb_094437_020 Hb_001629_050 Hb_001629_050 Hb_003858_060--Hb_001629_050 Hb_005305_030 Hb_005305_030 Hb_092029_010--Hb_005305_030 Hb_002308_060 Hb_002308_060 Hb_092029_010--Hb_002308_060 Hb_000264_340 Hb_000264_340 Hb_092029_010--Hb_000264_340 Hb_038833_010 Hb_038833_010 Hb_092029_010--Hb_038833_010 Hb_000465_450 Hb_000465_450 Hb_092029_010--Hb_000465_450 Hb_005306_020 Hb_005306_020 Hb_092029_010--Hb_005306_020 Hb_002983_090--Hb_000237_160 Hb_001468_040 Hb_001468_040 Hb_002983_090--Hb_001468_040 Hb_008461_070 Hb_008461_070 Hb_002983_090--Hb_008461_070 Hb_158534_010 Hb_158534_010 Hb_002983_090--Hb_158534_010 Hb_046117_030 Hb_046117_030 Hb_002983_090--Hb_046117_030 Hb_000033_010 Hb_000033_010 Hb_002983_090--Hb_000033_010 Hb_011432_010 Hb_011432_010 Hb_002876_280--Hb_011432_010 Hb_002876_280--Hb_000856_210 Hb_002973_130 Hb_002973_130 Hb_002876_280--Hb_002973_130 Hb_037519_010 Hb_037519_010 Hb_002876_280--Hb_037519_010 Hb_145080_010 Hb_145080_010 Hb_002876_280--Hb_145080_010 Hb_000685_140 Hb_000685_140 Hb_028872_100--Hb_000685_140 Hb_001411_100 Hb_001411_100 Hb_028872_100--Hb_001411_100 Hb_000767_010 Hb_000767_010 Hb_028872_100--Hb_000767_010 Hb_000417_150 Hb_000417_150 Hb_028872_100--Hb_000417_150 Hb_000101_320 Hb_000101_320 Hb_028872_100--Hb_000101_320 Hb_028872_100--Hb_005306_020 Hb_000753_150 Hb_000753_150 Hb_000237_160--Hb_000753_150 Hb_003517_090 Hb_003517_090 Hb_000237_160--Hb_003517_090 Hb_003177_090 Hb_003177_090 Hb_000237_160--Hb_003177_090 Hb_000237_170 Hb_000237_170 Hb_000237_160--Hb_000237_170 Hb_000959_010 Hb_000959_010 Hb_000237_160--Hb_000959_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0933926 0.0213529 0.0967955 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0168511 0 0.0670118 0.249626

CAGE analysis