Hb_003805_110

Information

Type -
Description -
Location Contig3805: 210340-214394
Sequence    

Annotation

kegg
ID tcc:TCM_006868
description Laccase 11
nr
ID XP_012067262.1
description PREDICTED: laccase-11-like [Jatropha curcas]
swissprot
ID Q9SIJ9
description Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1
trembl
ID A0A061DZ50
description Laccase OS=Theobroma cacao GN=TCM_006868 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003805_110 0.0 - - PREDICTED: laccase-11-like [Jatropha curcas]
2 Hb_029584_020 0.0257760213 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000530_060 0.0352007002 - - -
4 Hb_003058_150 0.0381422633 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
5 Hb_001140_110 0.0453157898 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
6 Hb_001097_110 0.0453257619 - - gibberellin 20-oxidase, putative [Ricinus communis]
7 Hb_081344_010 0.0504075564 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
8 Hb_000152_300 0.0529749272 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
9 Hb_000140_040 0.0529807852 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
10 Hb_007534_080 0.0529943046 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
11 Hb_000433_040 0.0536393103 - - -
12 Hb_005474_070 0.054027679 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
13 Hb_000504_220 0.0561776513 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
14 Hb_001089_120 0.0596603277 - - PREDICTED: pectinesterase [Jatropha curcas]
15 Hb_004818_010 0.0602780712 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
16 Hb_001951_050 0.0608861659 - - chlorophyll A/B binding protein, putative [Ricinus communis]
17 Hb_003093_050 0.0610583466 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
18 Hb_010666_020 0.0630883799 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
19 Hb_003647_070 0.0662235149 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
20 Hb_180094_010 0.0674366631 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]

Gene co-expression network

sample Hb_003805_110 Hb_003805_110 Hb_029584_020 Hb_029584_020 Hb_003805_110--Hb_029584_020 Hb_000530_060 Hb_000530_060 Hb_003805_110--Hb_000530_060 Hb_003058_150 Hb_003058_150 Hb_003805_110--Hb_003058_150 Hb_001140_110 Hb_001140_110 Hb_003805_110--Hb_001140_110 Hb_001097_110 Hb_001097_110 Hb_003805_110--Hb_001097_110 Hb_081344_010 Hb_081344_010 Hb_003805_110--Hb_081344_010 Hb_029584_020--Hb_000530_060 Hb_029584_020--Hb_081344_010 Hb_000433_040 Hb_000433_040 Hb_029584_020--Hb_000433_040 Hb_000152_300 Hb_000152_300 Hb_029584_020--Hb_000152_300 Hb_010666_020 Hb_010666_020 Hb_029584_020--Hb_010666_020 Hb_001089_120 Hb_001089_120 Hb_000530_060--Hb_001089_120 Hb_000504_220 Hb_000504_220 Hb_000530_060--Hb_000504_220 Hb_003093_050 Hb_003093_050 Hb_000530_060--Hb_003093_050 Hb_004818_010 Hb_004818_010 Hb_000530_060--Hb_004818_010 Hb_005474_070 Hb_005474_070 Hb_003058_150--Hb_005474_070 Hb_003058_150--Hb_001140_110 Hb_000940_120 Hb_000940_120 Hb_003058_150--Hb_000940_120 Hb_003647_070 Hb_003647_070 Hb_003058_150--Hb_003647_070 Hb_007534_080 Hb_007534_080 Hb_003058_150--Hb_007534_080 Hb_001951_050 Hb_001951_050 Hb_001140_110--Hb_001951_050 Hb_001140_110--Hb_001097_110 Hb_001080_290 Hb_001080_290 Hb_001140_110--Hb_001080_290 Hb_001140_110--Hb_000940_120 Hb_001097_110--Hb_001951_050 Hb_000140_040 Hb_000140_040 Hb_001097_110--Hb_000140_040 Hb_001097_110--Hb_007534_080 Hb_001097_110--Hb_003058_150 Hb_081344_010--Hb_000433_040 Hb_081344_010--Hb_000152_300 Hb_081344_010--Hb_010666_020 Hb_127349_020 Hb_127349_020 Hb_081344_010--Hb_127349_020 Hb_158597_010 Hb_158597_010 Hb_081344_010--Hb_158597_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0172558 0.0250915 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.127832

CAGE analysis