Hb_003807_020

Information

Type -
Description -
Location Contig3807: 5454-14206
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07580g
description POPTRDRAFT_560673; subtilase family protein
nr
ID XP_012084543.1
description PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
swissprot
ID O64481
description Subtilisin-like protease SBT2.5 OS=Arabidopsis thaliana GN=SBT2.5 PE=2 SV=1
trembl
ID A0A067JU07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19817 PE=3 SV=1
Gene Ontology
ID GO:0005618
description subtilisin-like protease isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38600: 5485-14149 , PASA_asmbl_38602: 6728-7069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003807_020 0.0 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
2 Hb_000335_050 0.0505988249 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
3 Hb_000579_180 0.0800262941 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
4 Hb_004447_020 0.0801603383 - - carbohydrate binding protein, putative [Ricinus communis]
5 Hb_002007_140 0.0804200509 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
6 Hb_009581_050 0.0822478721 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
7 Hb_002391_350 0.0841016636 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
8 Hb_001221_480 0.0857864869 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_012753_200 0.0868194961 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
10 Hb_000407_080 0.0930606137 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
11 Hb_002805_150 0.0957278793 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_000934_290 0.1003891062 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010926_010 0.103039235 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
14 Hb_006711_020 0.1033669199 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
15 Hb_012807_060 0.1064035643 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_000852_050 0.1124731895 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
17 Hb_111582_010 0.1156631126 - - hypothetical protein POPTR_0303s002201g, partial [Populus trichocarpa]
18 Hb_003788_010 0.1161106295 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
19 Hb_003376_200 0.1169294673 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_004884_200 0.1173249562 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003807_020 Hb_003807_020 Hb_000335_050 Hb_000335_050 Hb_003807_020--Hb_000335_050 Hb_000579_180 Hb_000579_180 Hb_003807_020--Hb_000579_180 Hb_004447_020 Hb_004447_020 Hb_003807_020--Hb_004447_020 Hb_002007_140 Hb_002007_140 Hb_003807_020--Hb_002007_140 Hb_009581_050 Hb_009581_050 Hb_003807_020--Hb_009581_050 Hb_002391_350 Hb_002391_350 Hb_003807_020--Hb_002391_350 Hb_010926_010 Hb_010926_010 Hb_000335_050--Hb_010926_010 Hb_000335_050--Hb_009581_050 Hb_000335_050--Hb_002391_350 Hb_000335_050--Hb_000579_180 Hb_000335_050--Hb_004447_020 Hb_012753_200 Hb_012753_200 Hb_000579_180--Hb_012753_200 Hb_000085_230 Hb_000085_230 Hb_000579_180--Hb_000085_230 Hb_000579_180--Hb_010926_010 Hb_012807_060 Hb_012807_060 Hb_000579_180--Hb_012807_060 Hb_001894_040 Hb_001894_040 Hb_000579_180--Hb_001894_040 Hb_003376_200 Hb_003376_200 Hb_004447_020--Hb_003376_200 Hb_002805_150 Hb_002805_150 Hb_004447_020--Hb_002805_150 Hb_004447_020--Hb_000579_180 Hb_004447_020--Hb_012753_200 Hb_002007_140--Hb_009581_050 Hb_002007_140--Hb_012753_200 Hb_019229_020 Hb_019229_020 Hb_002007_140--Hb_019229_020 Hb_017866_020 Hb_017866_020 Hb_002007_140--Hb_017866_020 Hb_002007_140--Hb_000335_050 Hb_000407_080 Hb_000407_080 Hb_009581_050--Hb_000407_080 Hb_009581_050--Hb_012807_060 Hb_003430_020 Hb_003430_020 Hb_009581_050--Hb_003430_020 Hb_004884_200 Hb_004884_200 Hb_002391_350--Hb_004884_200 Hb_009627_040 Hb_009627_040 Hb_002391_350--Hb_009627_040 Hb_005237_040 Hb_005237_040 Hb_002391_350--Hb_005237_040 Hb_006711_020 Hb_006711_020 Hb_002391_350--Hb_006711_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.258355 64.3633 15.5735 30.9063 0.288549 0.1191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20316 0.0799359 0.0218443 99.3491 9.72136

CAGE analysis