Hb_003813_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig3813: 1781-3753
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15590g
description hypothetical protein
nr
ID XP_012077982.1
description PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
swissprot
ID A4D998
description Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1
trembl
ID A0A067K9P1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12987 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bee 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38617: 2916-3306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_010 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
2 Hb_014720_100 0.19071267 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
3 Hb_001097_080 0.2042777402 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
4 Hb_000413_080 0.2069586127 - - -
5 Hb_003875_010 0.2110103465 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
6 Hb_017002_010 0.2118934144 - - PREDICTED: expansin-A15-like [Jatropha curcas]
7 Hb_007382_130 0.2225044078 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
8 Hb_000011_250 0.223147874 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
9 Hb_012799_080 0.2243802184 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
10 Hb_004117_330 0.228473808 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001157_210 0.2284894225 - - hypothetical protein CISIN_1g038260mg [Citrus sinensis]
12 Hb_003411_120 0.2353829523 - - hypothetical protein POPTR_0010s13670g [Populus trichocarpa]
13 Hb_003371_030 0.2361217366 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
14 Hb_004308_020 0.2361934292 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
15 Hb_178968_040 0.2366658643 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000635_020 0.236957101 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001514_260 0.2412643971 - - -
18 Hb_000622_120 0.2412776515 - - hypothetical protein [Hevea brasiliensis]
19 Hb_005144_170 0.2432042167 - - PREDICTED: shugoshin-1-like isoform X2 [Jatropha curcas]
20 Hb_000995_020 0.243219259 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003813_010 Hb_003813_010 Hb_014720_100 Hb_014720_100 Hb_003813_010--Hb_014720_100 Hb_001097_080 Hb_001097_080 Hb_003813_010--Hb_001097_080 Hb_000413_080 Hb_000413_080 Hb_003813_010--Hb_000413_080 Hb_003875_010 Hb_003875_010 Hb_003813_010--Hb_003875_010 Hb_017002_010 Hb_017002_010 Hb_003813_010--Hb_017002_010 Hb_007382_130 Hb_007382_130 Hb_003813_010--Hb_007382_130 Hb_178968_040 Hb_178968_040 Hb_014720_100--Hb_178968_040 Hb_014720_100--Hb_017002_010 Hb_008695_220 Hb_008695_220 Hb_014720_100--Hb_008695_220 Hb_005529_020 Hb_005529_020 Hb_014720_100--Hb_005529_020 Hb_002686_260 Hb_002686_260 Hb_014720_100--Hb_002686_260 Hb_014720_100--Hb_003875_010 Hb_003411_120 Hb_003411_120 Hb_001097_080--Hb_003411_120 Hb_147137_010 Hb_147137_010 Hb_001097_080--Hb_147137_010 Hb_001097_080--Hb_007382_130 Hb_000470_060 Hb_000470_060 Hb_001097_080--Hb_000470_060 Hb_012799_080 Hb_012799_080 Hb_001097_080--Hb_012799_080 Hb_016734_050 Hb_016734_050 Hb_001097_080--Hb_016734_050 Hb_004117_330 Hb_004117_330 Hb_000413_080--Hb_004117_330 Hb_002272_200 Hb_002272_200 Hb_000413_080--Hb_002272_200 Hb_000011_250 Hb_000011_250 Hb_000413_080--Hb_000011_250 Hb_002490_030 Hb_002490_030 Hb_000413_080--Hb_002490_030 Hb_000302_100 Hb_000302_100 Hb_000413_080--Hb_000302_100 Hb_005144_170 Hb_005144_170 Hb_000413_080--Hb_005144_170 Hb_001195_720 Hb_001195_720 Hb_003875_010--Hb_001195_720 Hb_104571_010 Hb_104571_010 Hb_003875_010--Hb_104571_010 Hb_000816_190 Hb_000816_190 Hb_003875_010--Hb_000816_190 Hb_003207_150 Hb_003207_150 Hb_003875_010--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_003875_010--Hb_001366_170 Hb_017002_010--Hb_008695_220 Hb_017002_010--Hb_178968_040 Hb_007574_040 Hb_007574_040 Hb_017002_010--Hb_007574_040 Hb_001635_010 Hb_001635_010 Hb_017002_010--Hb_001635_010 Hb_004079_050 Hb_004079_050 Hb_017002_010--Hb_004079_050 Hb_003226_130 Hb_003226_130 Hb_007382_130--Hb_003226_130 Hb_007382_130--Hb_000413_080 Hb_000164_010 Hb_000164_010 Hb_007382_130--Hb_000164_010 Hb_005227_050 Hb_005227_050 Hb_007382_130--Hb_005227_050 Hb_007382_130--Hb_003411_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0450502 0.0901278 0.672771 4.22153 0.0388673 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1833 0.648788 0 0.130211 0.222438

CAGE analysis